Pseudomonas aeruginosa PAO1, PA0044 (exoT)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Upstream Motifs

*Up to 500bp upstream
Name Start Stop Strand Evidence PMID
-10 element 58749 58754 +
8631719 Details
-35 element 58722 58727 +
8631719 Details
Shine-Dalgarno sequence 58769 58774 +
8631719 Details
ExsA binding site I 58711 58730 +
22408165 Details
ExsA binding site 2 58687 58707 +
22408165 Details
ExsA binding site 58702 58728 + ECO:0000314
direct assay evidence used in manual assertion
20233934 Details
ExsA binding site 58692 58709 + ECO:0000314
direct assay evidence used in manual assertion
22505688 Details

Motifs annotated in this feature

Name Start Stop Strand Evidence PMID
AmrZ binding site 59580 59592 - ECO:0000314
direct assay evidence used in manual assertion
24603766 Details
AmrZ binding site 59591 59603 - ECO:0000314
direct assay evidence used in manual assertion
24603766 Details

Downstream motifs

*Up to 500bp downstream
Name Start Stop Strand Evidence PMID
putative transcription terminator 60176 60200 +
8631719 Details
Rho-independent transcription terminator TERM 18 60177 60199 + ECO:0000246
computational combinatorial evidence used in automatic assertion
17313685 Details
Shine-Dalgarno sequence 60645 60649 + ECO:0000256
match to sequence model evidence used in automatic assertion
Details