Pseudomonas aeruginosa PAO1, PA0056 (osaR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0071977 bacterial-type flagellum-dependent swimming motility
IDA
Inferred from Direct Assay
ECO:0000314
direct assay evidence used in manual assertion
34339300 Reviewed by curator
Molecular Function GO:0003677 DNA binding
IDA
Inferred from Direct Assay
ECO:0000096
electrophoretic mobility shift assay evidence
34339300 Reviewed by curator
Biological Process GO:1902201 negative regulation of bacterial-type flagellum-dependent cell motility
IDA
Inferred from Direct Assay
ECO:0000314
direct assay evidence used in manual assertion
34339300 Reviewed by curator
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR30537 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 4 294 2.1E-89
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 88 294 6.52E-52
CDD cd08422 PBP2_CrgA_like - - 92 287 3.45981E-79
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 5 84 1.19E-20
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 7 62 7.8E-18
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 3 87 1.0E-21
FunFam G3DSA:1.10.10.10:FF:000001 LysR family transcriptional regulator - - 1 85 3.5E-22
Gene3D G3DSA:3.40.190.290 - - - 88 291 2.6E-68
FunFam G3DSA:3.40.190.290:FF:000001 Transcriptional regulator, LysR family - - 88 290 5.1E-71
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 88 291 6.8E-46

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.