Pseudomonas aeruginosa PAO1, PA0090 (clpV1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07724
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Protein secretion/export apparatus Other PAO1 genes in this class
Translation, post-translational modification, degradation Other PAO1 genes in this class
Chaperones & heat shock proteins Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM01086 ClpB_D2_small_2 IPR019489 Clp ATPase, C-terminal 804 896 5.4E-11
Coils Coil Coil - - 531 558 -
Pfam PF17871 AAA lid domain IPR041546 ClpA/ClpB, AAA lid domain 373 468 3.9E-28
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 183 373 8.4E-72
Coils Coil Coil - - 443 463 -
CDD cd19499 RecA-like_ClpB_Hsp104-like - - 594 802 5.2044E-91
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 375 579 5.8E-54
Coils Coil Coil - - 474 508 -
NCBIfam TIGR03345 JCVI: type VI secretion system ATPase TssH IPR017729 AAA+ ATPase ClpV1 13 888 0.0
FunFam G3DSA:3.40.50.300:FF:000025 ATP-dependent Clp protease subunit - - 585 802 2.4E-78
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 632 775 2.5E-9
FunFam G3DSA:3.40.50.300:FF:000010 Chaperone clpB 1, putative - - 182 373 2.5E-83
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 190 519 9.83E-73
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 710 728 4.6E-30
Pfam PF07724 AAA domain (Cdc48 subfamily) IPR003959 ATPase, AAA-type, core 631 797 2.0E-38
Pfam PF00004 ATPase family associated with various cellular activities (AAA) IPR003959 ATPase, AAA-type, core 234 367 2.5E-9
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 229 370 4.8E-10
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 743 757 4.6E-30
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 581 878 5.57E-63
Gene3D G3DSA:1.10.1780.10 - IPR036628 Clp, N-terminal domain superfamily 1 161 5.2E-41
Gene3D G3DSA:1.10.8.60 - - - 804 900 3.1E-7
CDD cd00009 AAA - - 212 367 4.58994E-15
PANTHER PTHR11638 ATP-DEPENDENT CLP PROTEASE - - 18 877 0.0
SUPERFAMILY SSF81923 Double Clp-N motif IPR036628 Clp, N-terminal domain superfamily 12 133 1.41E-17
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 681 699 4.6E-30
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 636 654 4.6E-30
Pfam PF10431 C-terminal, D2-small domain, of ClpB protein IPR019489 Clp ATPase, C-terminal 804 878 1.8E-12
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 585 802 2.3E-66

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.