Pseudomonas aeruginosa PAO1, PA0090 (clpV1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00004
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0019538 protein metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF81923
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Protein secretion/export apparatus Other PAO1 genes in this class
Translation, post-translational modification, degradation Other PAO1 genes in this class
Chaperones & heat shock proteins Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF10431 C-terminal, D2-small domain, of ClpB protein IPR019489 Clp ATPase, C-terminal 804 878 1.1E-12
Gene3D G3DSA:1.10.8.60 804 900 2.1E-9
SUPERFAMILY SSF81923 IPR036628 Clp, N-terminal domain superfamily 12 133 1.41E-17
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 190 519 9.83E-73
Gene3D G3DSA:3.40.50.300 375 579 1.1E-44
SMART SM01086 IPR019489 Clp ATPase, C-terminal 804 896 5.4E-11
CDD cd00009 AAA 212 367 3.2989E-15
Coils Coil 531 558 -
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 710 728 4.6E-30
Pfam PF07724 AAA domain (Cdc48 subfamily) IPR003959 ATPase, AAA-type, core 631 797 3.4E-38
SMART SM00382 IPR003593 AAA+ ATPase domain 229 370 4.8E-10
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 636 654 4.6E-30
CDD cd00009 AAA 606 754 1.95903E-15
Coils Coil 474 508 -
Pfam PF00004 ATPase family associated with various cellular activities (AAA) IPR003959 ATPase, AAA-type, core 234 367 2.3E-9
Gene3D G3DSA:1.10.1780.10 IPR036628 Clp, N-terminal domain superfamily 1 161 1.5E-44
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 681 699 4.6E-30
ProSitePatterns PS00870 Chaperonins clpA/B signature 1. IPR018368 ClpA/B, conserved site 1 325 337 -
SMART SM00382 IPR003593 AAA+ ATPase domain 632 775 2.5E-9
Gene3D G3DSA:3.40.50.300 585 802 1.9E-65
Gene3D G3DSA:3.40.50.300 183 373 1.2E-63
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 581 878 5.57E-63
TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family IPR017729 Type VI secretion system, ATPase ClpV1 13 888 0.0
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 743 757 4.6E-30
Coils Coil 443 463 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.