Pseudomonas aeruginosa PAO1, PA0266 (davT)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009448 gamma-aminobutyric acid metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00700
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003867 4-aminobutyrate transaminase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00700
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008483 transaminase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000521
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0030170 pyridoxal phosphate binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000521
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Carbon compound catabolism Other PAO1 genes in this class
Central intermediary metabolism Other PAO1 genes in this class
Amino acid biosynthesis and metabolism Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae00650 Butanoate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCyc ARGDEG-PWY superpathway of L-arginine, putrescine, and 4-aminobutyrate degradation 19.5 ECO:0000250
sequence similarity evidence used in manual assertion
12867747
PseudoCAP Polyamine catabolism ECO:0000037
not_recorded
KEGG pae00250 Alanine, aspartate and glutamate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCyc 4AMINOBUTMETAB-PWY superpathway of 4-aminobutyrate degradation 19.5 ECO:0000250
sequence similarity evidence used in manual assertion
12867747
PseudoCAP Propanoate metabolism ECO:0000037
not_recorded
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCyc PWY-6537 4-aminobutyrate degradation II 19.5 ECO:0000250
sequence similarity evidence used in manual assertion
12867747
PseudoCyc PWY-6535 4-aminobutyrate degradation I 19.5 ECO:0000250
sequence similarity evidence used in manual assertion
12867747
KEGG pae00310 Lysine degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCyc PUTDEG-PWY putrescine degradation I 19.5 ECO:0000250
sequence similarity evidence used in manual assertion
12867747
PseudoCAP Glutamate metabolism ECO:0000037
not_recorded
PseudoCyc ORNDEG-PWY superpathway of ornithine degradation 19.5 ECO:0000250
sequence similarity evidence used in manual assertion
12867747
KEGG pae01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Beta-Alanine metabolism ECO:0000037
not_recorded
PseudoCAP Alanine and Aspartate metabolism ECO:0000037
not_recorded
PseudoCAP Butanoate metabolism ECO:0000037
not_recorded
PseudoCyc ARGDEG-II-PWY arginine degradation II 19.5 ECO:0000250
sequence similarity evidence used in manual assertion
12867747

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.640.10 - IPR015421 Pyridoxal phosphate-dependent transferase, major domain 60 319 0.0
Pfam PF00202 Aminotransferase class-III IPR005814 Aminotransferase class-III 17 421 0.0
PIRSF PIRSF000521 Transaminase_4ab_Lys_Orn IPR005814 Aminotransferase class-III 172 425 4.1E-41
SUPERFAMILY SSF53383 PLP-dependent transferases IPR015424 Pyridoxal phosphate-dependent transferase 22 425 0.0
FunFam G3DSA:3.90.1150.10:FF:000022 4-aminobutyrate aminotransferase - - 279 419 3.6E-38
CDD cd00610 OAT_like IPR005814 Aminotransferase class-III 8 422 0.0
NCBIfam TIGR00700 JCVI: 4-aminobutyrate--2-oxoglutarate transaminase IPR004632 4-aminobutyrate aminotransferase, bacterial 10 421 0.0
PANTHER PTHR11986 AMINOTRANSFERASE CLASS III - - 7 423 1.8E-108
FunFam G3DSA:3.40.640.10:FF:000013 4-aminobutyrate aminotransferase - - 60 319 9.3E-120
Gene3D G3DSA:3.90.1150.10 Aspartate Aminotransferase, domain 1 IPR015422 Pyridoxal phosphate-dependent transferase, small domain 8 418 0.0
PIRSF PIRSF000521 Transaminase_4ab_Lys_Orn IPR005814 Aminotransferase class-III 25 129 0.0041
PIRSF PIRSF000521 Transaminase_4ab_Lys_Orn IPR005814 Aminotransferase class-III 124 157 0.52

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.