Pseudomonas aeruginosa PAO1, PA0275

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF13545
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF13545
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:2.60.120.10 Jelly Rolls IPR014710 RmlC-like jelly roll fold 1 150 7.9E-27
SMART SM00100 cnmp_10 IPR000595 Cyclic nucleotide-binding domain 16 134 7.3E-13
Pfam PF13545 Crp-like helix-turn-helix domain IPR012318 Crp-type HTH domain 154 224 3.7E-17
SMART SM00419 crpmeuga4 IPR012318 Crp-type HTH domain 170 218 3.0E-8
SUPERFAMILY SSF51206 cAMP-binding domain-like IPR018490 Cyclic nucleotide-binding domain superfamily 11 141 1.14E-30
PANTHER PTHR24567 CRP FAMILY TRANSCRIPTIONAL REGULATORY PROTEIN - - 11 225 2.8E-19
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 151 225 1.0E-15
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 152 225 1.82E-16
Pfam PF00027 Cyclic nucleotide-binding domain IPR000595 Cyclic nucleotide-binding domain 34 121 6.0E-20
CDD cd00038 CAP_ED IPR000595 Cyclic nucleotide-binding domain 16 130 2.94692E-24

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.