Pseudomonas aeruginosa PAO1, PA0386

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0051536 iron-sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00729
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00729
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006779 porphyrin-containing compound biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDF00562
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051539 4 iron, 4 sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDF00562
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDF00562
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004109 coproporphyrinogen oxidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDF00562
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Putative enzymes Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SFLD SFLDG01082 B12-binding domain containing - - 21 252 2.5E-17
CDD cd01335 Radical_SAM - - 20 222 3.58228E-14
SFLD SFLDF00288 HemN-like, clustered with nucleoside-triphosphate RdgB - - 7 383 0.0
SMART SM00729 MiaB IPR006638 Elp3/MiaA/NifB-like, radical SAM core domain 11 227 4.3E-57
Pfam PF06969 HemN C-terminal domain IPR010723 HemN, C-terminal 309 373 5.8E-14
SFLD SFLDF00562 HemN-like, clustered with heat shock genes IPR004559 Heme chaperone HemW-like 11 383 0.0
PANTHER PTHR13932 COPROPORPHYRINIGEN III OXIDASE IPR034505 Anaerobic coproporphyrinogen-III oxidase 10 383 6.0E-111
Pfam PF04055 Radical SAM superfamily IPR007197 Radical SAM 16 183 1.2E-19
NCBIfam TIGR00539 JCVI: radical SAM family heme chaperone HemW IPR004559 Heme chaperone HemW-like 13 346 1.2E-117
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 14 223 1.2E-10
SFLD SFLDG01065 anaerobic coproporphyrinogen-III oxidase like - - 7 383 0.0
SUPERFAMILY SSF102114 Radical SAM enzymes - - 10 383 5.49E-107

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.