Pseudomonas aeruginosa PAO1, PA0416 (chpD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02311
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Chemotaxis Other PAO1 genes in this class
Transcriptional regulators Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Chemotaxis ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF51215 Regulatory protein AraC IPR037923 Transcription regulator HTH-like 21 144 2.48E-15
Gene3D G3DSA:1.10.10.60 - - - 161 215 1.2E-13
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 177 259 7.2E-30
Pfam PF02311 AraC-like ligand binding domain IPR003313 AraC-type arabinose-binding/dimerisation domain 12 141 2.0E-21
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 161 211 8.51E-10
Gene3D G3DSA:1.10.10.60 - - - 216 264 2.2E-10
PANTHER PTHR46796 HTH-TYPE TRANSCRIPTIONAL ACTIVATOR RHAS-RELATED - - 11 263 1.7E-50
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 213 261 4.48E-9
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 183 260 2.8E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.