Pseudomonas aeruginosa PAO1, PA0564

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 265 280 6.2E-6
Gene3D G3DSA:1.10.10.60 - - - 197 255 4.4E-11
PANTHER PTHR46796 HTH-TYPE TRANSCRIPTIONAL ACTIVATOR RHAS-RELATED - - 19 300 6.7E-54
Gene3D G3DSA:1.10.10.60 - - - 256 302 1.5E-14
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 249 298 7.62E-13
Pfam PF02311 AraC-like ligand binding domain IPR003313 AraC-type arabinose-binding/dimerisation domain 17 173 4.0E-37
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 213 296 5.6E-31
CDD cd06995 cupin_YkgD-like_N - - 2 114 2.30012E-52
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 196 245 9.43E-8
Gene3D G3DSA:2.60.120.10 Jelly Rolls IPR014710 RmlC-like jelly roll fold 25 93 3.2E-6
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 219 298 4.3E-21
SUPERFAMILY SSF51182 RmlC-like cupins IPR011051 RmlC-like cupin domain superfamily 27 81 9.49E-8
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 280 296 6.2E-6

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.