Pseudomonas aeruginosa PAO1, PA0607 (rpe)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0005975 carbohydrate metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00429
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00429
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006098 pentose-phosphate shunt
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001461
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004750 ribulose-phosphate 3-epimerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001461
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Energy metabolism Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCyc NONOXIPENT-PWY pentose phosphate pathway (non-oxidative branch) 19.5 ECO:0000250
sequence similarity evidence used in manual assertion
12867747
KEGG pae00030 Pentose phosphate pathway 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCyc PENTOSE-P-PWY pentose phosphate pathway 19.5 ECO:0000250
sequence similarity evidence used in manual assertion
12867747
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Pentose phosphate cycle ECO:0000037
not_recorded
KEGG pae01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCyc P122-PWY heterolactic fermentation 19.5 ECO:0000250
sequence similarity evidence used in manual assertion
12867747
KEGG pae01200 Carbon metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Carbon fixation ECO:0000037
not_recorded
KEGG pae01230 Biosynthesis of amino acids 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Pentose and glucuronate interconversions ECO:0000037
not_recorded
KEGG pae00040 Pentose and glucuronate interconversions 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR11749 RIBULOSE-5-PHOSPHATE-3-EPIMERASE IPR000056 Ribulose-phosphate 3-epimerase-like 5 223 4.5E-79
Pfam PF00834 Ribulose-phosphate 3 epimerase family IPR000056 Ribulose-phosphate 3-epimerase-like 6 203 4.2E-89
PIRSF PIRSF001461 RPE IPR026019 Ribulose-phosphate 3-epimerase 1 224 6.4E-103
CDD cd00429 RPE IPR000056 Ribulose-phosphate 3-epimerase-like 6 216 8.27531E-122
FunFam G3DSA:3.20.20.70:FF:000004 Ribulose-phosphate 3-epimerase - - 1 222 1.2E-101
SUPERFAMILY SSF51366 Ribulose-phoshate binding barrel IPR011060 Ribulose-phosphate binding barrel 4 217 7.85E-76
NCBIfam TIGR01163 JCVI: ribulose-phosphate 3-epimerase IPR026019 Ribulose-phosphate 3-epimerase 6 216 1.6E-98
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 1 223 4.6E-94
Hamap MF_02227 Ribulose-phosphate 3-epimerase [rpe]. IPR026019 Ribulose-phosphate 3-epimerase 3 218 60.094696

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.