Pseudomonas aeruginosa PAO1, PA0653
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| transcriptional initiation site (+1) | 706818 | 706818 | - |
|
9139892 | Details |
| transcriptional initiation site (+1) | 706923 | 706923 | + |
|
9139892 | Details |
| orfX promoter | 706879 | 706928 | + |
|
9139892 | Details |
| vfr promoter | 706813 | 706862 | - |
|
9139892 | Details |
| Vfr binding site | 706860 | 706891 | - |
ECO:0000314
direct assay evidence used in manual assertion |
20494996 | Details |
| Shine-Dalgarno sequence | 706680 | 706682 | - |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details | |
| Shine-Dalgarno sequence | 706932 | 706935 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: AAAAGGGGCGCA-N33-TGCGCCCCTTTT | 707386 | 707442 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |