Pseudomonas aeruginosa PAO1, PA0654 (speD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0008152 metabolic process
ISS
Inferred from Sequence or Structural Similarity
ECO:0000044
sequence similarity evidence
Biological Process GO:0008295 spermidine biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02675
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004014 adenosylmethionine decarboxylase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02675
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Central intermediary metabolism Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCyc BSUBPOLYAMSYN-PWY spermidine biosynthesis I 19.5 ECO:0000250
sequence similarity evidence used in manual assertion
12867747
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCyc POLYAMSYN-PWY superpathway of polyamine biosynthesis I 19.5 ECO:0000250
sequence similarity evidence used in manual assertion
12867747
KEGG pae00270 Cysteine and methionine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae00330 Arginine and proline metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
TIGRFAM TIGR03331 SAM_DCase_Eco: S-adenosylmethionine decarboxylase proenzyme IPR009165 S-adenosylmethionine decarboxylase, bacterial 4 262 0.0
PIRSF PIRSF001356 IPR009165 S-adenosylmethionine decarboxylase, bacterial 1 264 0.0
Hamap MF_00465 S-adenosylmethionine decarboxylase proenzyme [speD]. IPR009165 S-adenosylmethionine decarboxylase, bacterial 1 264 168.903
SUPERFAMILY SSF56276 IPR016067 S-adenosylmethionine decarboxylase, core 44 174 4.71E-25
Pfam PF02675 S-adenosylmethionine decarboxylase IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic 36 170 1.1E-31
Gene3D G3DSA:3.60.90.10 98 186 2.6E-7

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.