Pseudomonas aeruginosa PAO1, PA0707 (toxR)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| PvdS binding site | 781042 | 781050 | - |
|
12368452 | Details |
| P1 promoter of regAB operon | 781044 | 781093 | - |
|
1917842 | Details |
| toxR promoter | 780989 | 781039 | - |
|
3031589 | Details |
| regA promoter 1 | 781044 | 781093 | - |
|
8843437 | Details |
| regA promoter 2 | 781133 | 781182 | - |
|
8843437 | Details |
| P1 promoter of regA gene | 781044 | 781093 | - |
|
2113156 | Details |
| P2 promoter of regA gene | 781133 | 781182 | - |
|
2113156 | Details |
| PvdS-RNAP retarded fragment upstream of toxR gene | 780975 | 781225 | - |
|
18048935 | Details |
| Inverted repeat: GCCTGCGTGC-N14-GCACGCAGGC | 781390 | 781423 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: CGTTCAGCAG-N6-CTGCTGAACG | 780191 | 780216 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: CGTTCAGCAG-N6-CTGCTGAACG | 780191 | 780216 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Shine-Dalgarno sequence | 780110 | 780112 | - |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |