Pseudomonas aeruginosa PAO1, PA0762 (algU)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:1900189	positive regulation of cell adhesion involved in single-species biofilm formation	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	20348252	Reviewed by curator
Biological Process	GO:0071236	cellular response to antibiotic	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	18838593	Reviewed by curator
Biological Process	GO:0036460	cellular response to cell envelope stress	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	19226327	Reviewed by curator
Biological Process	GO:1902201	negative regulation of bacterial-type flagellum-dependent cell motility	IMP Inferred from Mutant Phenotype	ECO:0000015 mutant phenotype evidence	16291668	Reviewed by curator
Molecular Function	GO:0016987	sigma factor activity	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	7644517	Reviewed by curator
Biological Process	GO:0032885	regulation of polysaccharide biosynthetic process	IMP Inferred from Mutant Phenotype	ECO:0000015 mutant phenotype evidence	14645293	Reviewed by curator
Biological Process	GO:2000154	obsolete negative regulation of flagellar cell motility
Biological Process	GO:1900036	positive regulation of cellular response to heat	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	9159526	Reviewed by curator
Biological Process	GO:1900233	positive regulation of single-species biofilm formation on inanimate substrate	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	20348252	Reviewed by curator
Biological Process	GO:1902884	positive regulation of response to oxidative stress	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	7961422	Reviewed by curator
Biological Process	GO:0032885	regulation of polysaccharide biosynthetic process	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	7928961	Reviewed by curator
Biological Process	GO:0009405	pathogenesis	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	8698507	Reviewed by curator
Cellular Component	GO:0000345	cytosolic DNA-directed RNA polymerase complex	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	7644517	Reviewed by curator
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02939	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016987	sigma factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02939	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006352	DNA-templated transcription, initiation	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02939	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02939	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02939	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
PseudoCAP		Alginate biosynthesis		ECO:0000037 not_recorded

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
FunFam	G3DSA:1.10.10.10:FF:000043	RNA polymerase sigma factor	-	-	122	192	1.0E-39
Gene3D	G3DSA:1.10.1740.10	-	-	-	1	121	4.4E-36
PANTHER	PTHR43133	RNA POLYMERASE ECF-TYPE SIGMA FACTO	IPR039425	RNA polymerase sigma-70 like	3	189	2.8E-47
SUPERFAMILY	SSF88946	Sigma2 domain of RNA polymerase sigma factors	IPR013325	RNA polymerase sigma factor, region 2	1	108	1.38E-32
SUPERFAMILY	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	IPR013324	RNA polymerase sigma factor, region 3/4-like	123	187	7.85E-18
NCBIfam	TIGR02937	JCVI: sigma-70 family RNA polymerase sigma factor	IPR014284	RNA polymerase sigma-70 like domain	21	186	2.0E-30
Gene3D	G3DSA:1.10.10.10	-	IPR036388	Winged helix-like DNA-binding domain superfamily	122	192	2.2E-23
Pfam	PF08281	Sigma-70, region 4	IPR013249	RNA polymerase sigma factor 70, region 4 type 2	132	181	3.1E-18
NCBIfam	TIGR02939	JCVI: RNA polymerase sigma factor RpoE	IPR014286	RNA polymerase sigma-70 RpoE type	3	190	2.4E-98
CDD	cd06171	Sigma70_r4	-	-	132	182	6.40095E-13
FunFam	G3DSA:1.10.1740.10:FF:000001	RNA polymerase sigma factor	-	-	1	121	1.2E-65
Pfam	PF04542	Sigma-70 region 2	IPR007627	RNA polymerase sigma-70 region 2	25	92	1.1E-17

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.