Pseudomonas aeruginosa PAO1, PA0762 (algU)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0032885 regulation of polysaccharide biosynthetic process
IMP
Inferred from Mutant Phenotype
ECO:0000315
mutant phenotype evidence used in manual assertion
7928961 Reviewed by curator
Biological Process GO:1902201 negative regulation of bacterial-type flagellum-dependent cell motility
IMP
Inferred from Mutant Phenotype
ECO:0000015
mutant phenotype evidence
16291668 Reviewed by curator
Biological Process GO:0071236 cellular response to antibiotic
IMP
Inferred from Mutant Phenotype
ECO:0000315
mutant phenotype evidence used in manual assertion
18838593 Reviewed by curator
Biological Process GO:0009405 pathogenesis
IMP
Inferred from Mutant Phenotype
ECO:0000315
mutant phenotype evidence used in manual assertion
8698507 Reviewed by curator
Molecular Function GO:0016987 sigma factor activity
IDA
Inferred from Direct Assay
ECO:0000314
direct assay evidence used in manual assertion
7644517 Reviewed by curator
Biological Process GO:0036460 cellular response to cell envelope stress
IDA
Inferred from Direct Assay
ECO:0000314
direct assay evidence used in manual assertion
19226327 Reviewed by curator
Biological Process GO:1900233 positive regulation of single-species biofilm formation on inanimate substrate
IMP
Inferred from Mutant Phenotype
ECO:0000315
mutant phenotype evidence used in manual assertion
20348252 Reviewed by curator
Biological Process GO:1900036 positive regulation of cellular response to heat
IDA
Inferred from Direct Assay
ECO:0000314
direct assay evidence used in manual assertion
9159526 Reviewed by curator
Cellular Component GO:0000345 cytosolic DNA-directed RNA polymerase complex
IDA
Inferred from Direct Assay
ECO:0000314
direct assay evidence used in manual assertion
7644517 Reviewed by curator
Biological Process GO:1902884 positive regulation of response to oxidative stress
IMP
Inferred from Mutant Phenotype
ECO:0000315
mutant phenotype evidence used in manual assertion
7961422 Reviewed by curator
Biological Process GO:0032885 regulation of polysaccharide biosynthetic process
IMP
Inferred from Mutant Phenotype
ECO:0000015
mutant phenotype evidence
14645293 Reviewed by curator
Biological Process GO:2000154 obsolete negative regulation of flagellar cell motility

Biological Process GO:1900189 positive regulation of cell adhesion involved in single-species biofilm formation
IMP
Inferred from Mutant Phenotype
ECO:0000315
mutant phenotype evidence used in manual assertion
20348252 Reviewed by curator
Molecular Function GO:0016987 sigma factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006352 DNA-templated transcription, initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Alginate biosynthesis ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd06171 Sigma70_r4 132 182 4.60051E-13
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 122 192 1.2E-22
ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. IPR000838 RNA polymerase sigma factor 70, ECF, conserved site 47 78 -
TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family IPR014284 RNA polymerase sigma-70 like domain 21 186 5.7E-31
SUPERFAMILY SSF88659 IPR013324 RNA polymerase sigma factor, region 3/4-like 123 187 7.85E-18
TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE IPR014286 RNA polymerase sigma-70 RpoE type 3 190 6.9E-99
SUPERFAMILY SSF88946 IPR013325 RNA polymerase sigma factor, region 2 1 108 1.38E-32
Pfam PF08281 Sigma-70, region 4 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 132 181 2.9E-18
Pfam PF04542 Sigma-70 region 2 IPR007627 RNA polymerase sigma-70 region 2 25 92 1.1E-17
Gene3D G3DSA:1.10.1740.10 1 121 5.9E-43

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.