Pseudomonas aeruginosa PAO1, PA0770 (rnc)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00535
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00104
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004525 ribonuclease III activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00535
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006364 rRNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00104
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.30.160.20:FF:000077 Ribonuclease 3 - - 153 223 1.0E-51
SUPERFAMILY SSF69065 RNase III domain-like IPR036389 Ribonuclease III, endonuclease domain superfamily 4 158 7.32E-50
CDD cd10845 DSRM_RNAse_III_family - - 153 212 5.83914E-19
SMART SM00535 riboneu5 IPR000999 Ribonuclease III domain 20 148 1.8E-59
Gene3D G3DSA:1.10.1520.10 Ribonuclease III domain IPR036389 Ribonuclease III, endonuclease domain superfamily 1 145 1.2E-45
Gene3D G3DSA:3.30.160.20 - - - 153 223 4.0E-17
FunFam G3DSA:1.10.1520.10:FF:000001 Ribonuclease 3 - - 2 147 2.1E-53
SUPERFAMILY SSF54768 dsRNA-binding domain-like - - 108 226 5.79E-26
NCBIfam TIGR02191 JCVI: ribonuclease III IPR011907 Ribonuclease III 8 220 8.1E-69
CDD cd00593 RIBOc IPR000999 Ribonuclease III domain 20 148 6.33427E-55
PANTHER PTHR14950 DICER-RELATED - - 2 222 2.9E-34
SMART SM00358 DRBM_3 IPR014720 Double-stranded RNA-binding domain 155 223 7.1E-16
Pfam PF00035 Double-stranded RNA binding motif IPR014720 Double-stranded RNA-binding domain 155 219 5.5E-8
Pfam PF14622 Ribonuclease-III-like IPR000999 Ribonuclease III domain 18 139 1.3E-34
Hamap MF_00104 Ribonuclease 3 [rnc]. IPR011907 Ribonuclease III 8 219 30.116226

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.