Pseudomonas aeruginosa PAO1, PA0770 (rnc)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50142
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004525 ribonuclease III activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50142
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02191
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0016075 rRNA catabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02191
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00104 Ribonuclease 3 [rnc]. IPR011907 Ribonuclease III 8 219 30.116
ProSiteProfiles PS50137 Double stranded RNA-binding domain (dsRBD) profile. IPR014720 Double-stranded RNA-binding domain 154 224 15.995
Gene3D G3DSA:1.10.1520.10 IPR036389 Ribonuclease III, endonuclease domain superfamily 1 145 4.1E-45
Pfam PF00035 Double-stranded RNA binding motif IPR014720 Double-stranded RNA-binding domain 155 219 8.4E-8
SUPERFAMILY SSF54768 108 226 5.79E-26
Gene3D G3DSA:3.30.160.20 153 223 8.5E-16
SMART SM00358 IPR014720 Double-stranded RNA-binding domain 155 223 7.1E-16
CDD cd00048 DSRM IPR014720 Double-stranded RNA-binding domain 154 212 2.79858E-13
ProSitePatterns PS00517 Ribonuclease III family signature. IPR000999 Ribonuclease III domain 37 45 -
SMART SM00535 IPR000999 Ribonuclease III domain 20 148 1.8E-59
CDD cd00593 RIBOc IPR000999 Ribonuclease III domain 20 148 4.55258E-55
TIGRFAM TIGR02191 RNaseIII: ribonuclease III IPR011907 Ribonuclease III 8 220 2.4E-69
SUPERFAMILY SSF69065 IPR036389 Ribonuclease III, endonuclease domain superfamily 4 158 7.32E-50
Pfam PF14622 Ribonuclease-III-like IPR000999 Ribonuclease III domain 18 139 6.9E-35
ProSiteProfiles PS50142 Ribonuclease III family domain profile. IPR000999 Ribonuclease III domain 5 127 48.744

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.