Pseudomonas aeruginosa PAO1, PA0782 (putA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: CGCCGCCGGC-N7-GCCGGCGGCG | 851688 | 851714 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Shine-Dalgarno sequence | 851772 | 851776 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| AmrZ binding site | 853719 | 853731 | - |
ECO:0000314
direct assay evidence used in manual assertion |
24603766 | Details |
| Inverted repeat: TCTGGCCGAG-N81-CTCGGCCAGA | 852061 | 852161 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: GCCGCGCTGG-N62-CCAGCGCGGC | 853633 | 853714 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: CCCGGGCGCC-N2-GGCGCCCGGG | 854975 | 854996 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Rho-independent transcription terminator TERM 190 | 854970 | 855000 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |