Pseudomonas aeruginosa PAO1, PA0905 (rsmA)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003729	mRNA binding Interaction partner: PseudoCAP:PA0082	IPI Inferred from Physical Interaction	ECO:0000353 physical interaction evidence used in manual assertion	19426209	Reviewed by curator
Biological Process	GO:0030254	protein secretion by the type III secretion system	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	19426209	Reviewed by curator
Molecular Function	GO:0003729	mRNA binding Interaction partner: PseudoCAP:PA0527.1	IPI Inferred from Physical Interaction	ECO:0000353 physical interaction evidence used in manual assertion	19426209	Reviewed by curator
Biological Process	GO:0009405	pathogenesis	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	16622241	Reviewed by curator
Molecular Function	GO:0003729	mRNA binding Interaction partner: PseudoCAP:PA0081	IPI Inferred from Physical Interaction	ECO:0000353 physical interaction evidence used in manual assertion	19426209	Reviewed by curator
Biological Process	GO:0043455	regulation of secondary metabolic process	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	11673439	Reviewed by curator
Molecular Function	GO:0003729	mRNA binding Interaction partner: PseudoCAP:PA4492	IPI Inferred from Physical Interaction	ECO:0000353 physical interaction evidence used in manual assertion	19426209	Reviewed by curator
Biological Process	GO:1900190	regulation of single-species biofilm formation	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	20735777	Reviewed by curator
Biological Process	GO:0033103	protein secretion by the type VI secretion system	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	19426209	Reviewed by curator
Molecular Function	GO:0003729	mRNA binding Interaction partner: PseudoCAP:PA3621.1	IPI Inferred from Physical Interaction	ECO:0000353 physical interaction evidence used in manual assertion	19426209	Reviewed by curator
Biological Process	GO:0009372	quorum sensing	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	11673439	Reviewed by curator
Molecular Function	GO:0003723	RNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PTHR34984	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006402	mRNA catabolic process	ISM Inferred from Sequence Model Term mapped from: InterPro:PTHR34984	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006109	regulation of carbohydrate metabolic process	ISM Inferred from Sequence Model Term mapped from: InterPro:PTHR34984	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Translation, post-translational modification, degradation Other PAO1 genes in this class Adaptation, Protection Other PAO1 genes in this class

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pae02025	Biofilm formation - Pseudomonas aeruginosa	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pae02020	Two-component system	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SUPERFAMILY	SSF117130	CsrA-like	IPR036107	Carbon storage regulator superfamily	1	54	5.49E-21
Pfam	PF02599	Global regulator protein family	IPR003751	Translational regulator CsrA	1	53	6.3E-26
PANTHER	PTHR34984	CARBON STORAGE REGULATOR	IPR003751	Translational regulator CsrA	1	59	4.1E-25
NCBIfam	TIGR00202	JCVI: carbon storage regulator CsrA	IPR003751	Translational regulator CsrA	1	57	5.6E-30
Gene3D	G3DSA:2.60.40.4380	Translational regulator CsrA	IPR036107	Carbon storage regulator superfamily	1	61	2.3E-27
FunFam	G3DSA:2.60.40.4380:FF:000001	Translational regulator CsrA	-	-	1	60	4.8E-40
Hamap	MF_00167	Translational regulator CsrA [csrA].	IPR003751	Translational regulator CsrA	1	60	17.07373

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.