Pseudomonas aeruginosa PAO1, PA0965 (ruvC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00228
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00228
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.420.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004520 endodeoxyribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00228
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC IPR002176 Crossover junction endodeoxyribonuclease RuvC 4 150 6.8E-68
PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature IPR002176 Crossover junction endodeoxyribonuclease RuvC 5 18 6.2E-41
CDD cd16962 RuvC IPR002176 Crossover junction endodeoxyribonuclease RuvC 4 153 2.32532E-77
FunFam G3DSA:3.30.420.10:FF:000002 Crossover junction endodeoxyribonuclease RuvC - - 2 158 5.4E-63
PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature IPR002176 Crossover junction endodeoxyribonuclease RuvC 107 126 6.2E-41
PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature IPR002176 Crossover junction endodeoxyribonuclease RuvC 83 99 6.2E-41
Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. IPR002176 Crossover junction endodeoxyribonuclease RuvC 2 153 47.810333
SUPERFAMILY SSF53098 Ribonuclease H-like IPR012337 Ribonuclease H-like superfamily 3 156 1.74E-50
Gene3D G3DSA:3.30.420.10 - IPR036397 Ribonuclease H superfamily 2 158 6.3E-52
PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature IPR002176 Crossover junction endodeoxyribonuclease RuvC 61 77 6.2E-41
PANTHER PTHR30194 CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC IPR002176 Crossover junction endodeoxyribonuclease RuvC 2 157 2.0E-60
PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature IPR002176 Crossover junction endodeoxyribonuclease RuvC 138 150 6.2E-41
NCBIfam TIGR00228 JCVI: crossover junction endodeoxyribonuclease RuvC IPR002176 Crossover junction endodeoxyribonuclease RuvC 4 155 1.4E-59

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.