Pseudomonas aeruginosa PAO1, PA0967 (ruvB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006281 DNA repair
IMP
Inferred from Mutant Phenotype 		ECO:0000015
mutant phenotype evidence		 10913087 Reviewed by curator
Biological Process GO:0072715 cellular response to selenite ion
IMP
Inferred from Mutant Phenotype 		ECO:0000015
mutant phenotype evidence		 16105671 Reviewed by curator
Biological Process GO:0006281 DNA repair
IMP
Inferred from Mutant Phenotype 		ECO:0000015
mutant phenotype evidence		 16105671 Reviewed by curator
Biological Process GO:0071247 cellular response to chromate
IMP
Inferred from Mutant Phenotype 		ECO:0000015
mutant phenotype evidence		 16105671 Reviewed by curator
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF05491
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF05491
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF05491
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009378 four-way junction helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF05491
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR42848
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00016 Holliday junction branch migration complex subunit RuvB [ruvB]. IPR004605 Holliday junction branch migration complex subunit RuvB 1 352 182.798431
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 23 184 1.6E-43
PANTHER PTHR42848 - IPR004605 Holliday junction branch migration complex subunit RuvB 2 335 0.0
FunFam G3DSA:1.10.10.10:FF:000086 Holliday junction ATP-dependent DNA helicase RuvB - - 261 337 2.8E-41
Pfam PF17864 RuvB AAA lid domain IPR041445 RuvB, AAA lid domain 185 258 3.6E-33
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 24 255 1.84E-51
CDD cd00009 AAA - - 42 179 1.73413E-12
Pfam PF05491 RuvB C-terminal winged helix domain IPR008823 RuvB C-terminal winged helix domain 259 329 4.8E-25
Gene3D G3DSA:1.10.8.60 - - - 185 260 2.5E-33
FunFam G3DSA:1.10.8.60:FF:000023 Holliday junction ATP-dependent DNA helicase RuvB - - 187 259 2.4E-35
FunFam G3DSA:3.40.50.300:FF:000073 Holliday junction ATP-dependent DNA helicase RuvB - - 23 184 1.7E-94
NCBIfam TIGR00635 JCVI: Holliday junction DNA helicase RuvB IPR004605 Holliday junction branch migration complex subunit RuvB 28 330 0.0
Pfam PF05496 Holliday junction DNA helicase RuvB P-loop domain IPR008824 RuvB-like P-loop domain 24 182 4.1E-81
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 261 352 1.7E-37
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 55 182 7.4E-13
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 261 334 1.47E-25

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.