Pseudomonas aeruginosa PAO1, PA1003 (mvfR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Upstream Motifs

*Up to 500bp upstream
Name Start Stop Strand Evidence PMID
transcriptional initiation site (+1) 1087373 1087373 -
12207696 Details
-10 region 1087384 1087389 -
12207696 Details
-35 region 1087405 1087410 -
12207696 Details
PvdS binding site 1087459 1087467 -
12207696 Details
LasR predicted site upstream of mvfR gene 1087380 1087629 -
Details
pqsR promoter TS1 1087169 1087418 -
Details
transcription initiation site 1087373 1087373 -
15968046 Details
transcription initiation site 1087273 1087273 -
15968046 Details
OxyR binding site 1087459 1087473 + ECO:0000314
direct assay evidence used in manual assertion
7635828 Details
PvdS binding site 1087442 1087465 - ECO:0000314
direct assay evidence used in manual assertion
22510163 Details
Shine-Dalgarno sequence 1087103 1087106 - ECO:0000256
match to sequence model evidence used in automatic assertion
Details
MpaR binding site 1087270 1087311 - ECO:0001807
32748556 Details

Motifs annotated in this feature

Name Start Stop Strand Evidence PMID
Inverted repeat: CGTTTCGACGATGC-N17-GCATCGTCGAAACG 1086157 1086201 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details

Downstream motifs

*Up to 500bp downstream
Name Start Stop Strand Evidence PMID
Inverted repeat: TGCGCATCAC-N73-GTGATGCGCA 1085543 1085635 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details