Pseudomonas aeruginosa PAO1, PA1072 (braE)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
IDA
Inferred from Direct Assay 		ECO:0000002
direct assay evidence
Biological Process GO:0042941 D-alanine transport
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 18833300 Reviewed by curator
Biological Process GO:0006810 transport
IDA
Inferred from Direct Assay 		ECO:0000002
direct assay evidence
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02653
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02653
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02653
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015658 branched-chain amino acid transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30482
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transport of small molecules Other PAO1 genes in this class
Membrane proteins Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae02024 Quorum sensing 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae02010 ABC transporters 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF11862 Domain of unknown function (DUF3382) IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal 3 105 1.5E-19
PANTHER PTHR30482 HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE IPR043428 High-affinity branched-chain amino acid transport system permease protein LivM-like 88 414 2.2E-112
Pfam PF02653 Branched-chain amino acid transport system / permease component IPR001851 ABC transporter, permease 114 398 3.5E-55
CDD cd06581 TM_PBP1_LivM_like IPR043428 High-affinity branched-chain amino acid transport system permease protein LivM-like 120 407 4.38378E-78

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.