Pseudomonas aeruginosa PAO1, PA1096
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Shine-Dalgarno sequence | 1186596 | 1186599 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| -35 region | 1187434 | 1187439 | + |
|
12218009 | Details |
| -10 region | 1187457 | 1187462 | + |
|
12218009 | Details |
| Vfr binding site | 1187459 | 1187482 | + |
|
12218009 | Details |
| transcriptional initiation site (+1) | 1187466 | 1187466 | + |
|
12218009 | Details |
| transcriptional initiation site (+1) | 1187469 | 1187469 | + |
|
12218009 | Details |
| AmrZ retarded fragment upstream of fleQ gene | 1187323 | 1187585 | + |
|
16952938 | Details |
| AmrZ binding site | 1187311 | 1187323 | - |
ECO:0000314
direct assay evidence used in manual assertion |
24603766 | Details |
| Vfr binding site | 1187459 | 1187482 | + |
ECO:0000314
direct assay evidence used in manual assertion |
12218009 | Details |
| Rho-independent transcription terminator TERM 305 | 1187374 | 1187410 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |
| Shine-Dalgarno sequence | 1187572 | 1187574 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |