Pseudomonas aeruginosa PAO1, PA1097 (fleQ)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| -35 region | 1187434 | 1187439 | + |
|
12218009 | Details |
| -10 region | 1187457 | 1187462 | + |
|
12218009 | Details |
| Vfr binding site | 1187459 | 1187482 | + |
|
12218009 | Details |
| transcriptional initiation site (+1) | 1187466 | 1187466 | + |
|
12218009 | Details |
| transcriptional initiation site (+1) | 1187469 | 1187469 | + |
|
12218009 | Details |
| AmrZ retarded fragment upstream of fleQ gene | 1187323 | 1187585 | + |
|
16952938 | Details |
| AmrZ binding site | 1187311 | 1187323 | - |
ECO:0000314
direct assay evidence used in manual assertion |
24603766 | Details |
| Vfr binding site | 1187459 | 1187482 | + |
ECO:0000314
direct assay evidence used in manual assertion |
12218009 | Details |
| Rho-independent transcription terminator TERM 305 | 1187374 | 1187410 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |
| Shine-Dalgarno sequence | 1187572 | 1187574 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| FleQ (NifA) binding site | 1188638 | 1188653 | + |
|
9488388 | Details |
| Inverted repeat: ACGACCTGTC-N8-GACAGGTCGT | 1189040 | 1189067 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| IHF binding site | 1189066 | 1189099 | + |
|
9488388 | Details |
| RpoN binding site | 1189104 | 1189117 | + |
|
9488388 | Details |
| transcriptional initiation site (+1) | 1189129 | 1189129 | + |
|
9488388 | Details |
| fleSR promoter | 1189084 | 1189133 | + |
|
9287015 | Details |
| fleSR promoter region | 1189107 | 1189138 | + |
|
9287015 | Details |
| Inverted repeat: ACGACCTGTC-N8-GACAGGTCGT | 1189040 | 1189067 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Shine-Dalgarno sequence | 1189162 | 1189164 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |