Pseudomonas aeruginosa PAO1, PA1134

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Upstream Motifs

*Up to 500bp upstream
Name Start Stop Strand Evidence PMID
PvdS binding site 1226351 1226359 -
12207696 Details
PvdS binding site 1226334 1226357 - ECO:0000314
direct assay evidence used in manual assertion
18166197 Details
Inverted repeat: CCCCGTCCGTG-N3-CACGGACGGGG 1226390 1226414 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details

Motifs annotated in this feature

Name Start Stop Strand Evidence PMID
Inverted repeat: GCTGGCGCTGG-N8-CCAGCGCCAGC 1225795 1225824 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details

Downstream motifs

*Up to 500bp downstream
Name Start Stop Strand Evidence PMID
Shine-Dalgarno sequence 1225703 1225705 - ECO:0000256
match to sequence model evidence used in automatic assertion
Details