Pseudomonas aeruginosa PAO1, PA1159

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Upstream Motifs

*Up to 500bp upstream
Name Start Stop Strand Evidence PMID
LasR binding site 1257585 1257600 +
Details
LasR binding site 1257585 1257600 + ECO:0000314
direct assay evidence used in manual assertion
19682264 Details
LasR binding site 1257515 1257530 + ECO:0000314
direct assay evidence used in manual assertion
19682264 Details
OxyR binding site 1257468 1257482 + ECO:0000314
direct assay evidence used in manual assertion
7635828 Details
Shine-Dalgarno sequence 1257759 1257762 + ECO:0000256
match to sequence model evidence used in automatic assertion
Details

Downstream motifs

*Up to 500bp downstream
Name Start Stop Strand Evidence PMID
Inverted repeat: CAAAAGCCCGTC-N4-GACGGGCTTTTG 1257992 1258019 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details
Rho-independent transcription terminator TERM 316 1257997 1258014 - ECO:0000246
computational combinatorial evidence used in automatic assertion
17313685 Details
Rho-independent transcription terminator TERM 317 1257997 1258014 + ECO:0000246
computational combinatorial evidence used in automatic assertion
17313685 Details