Pseudomonas aeruginosa PAO1, PA1300 (hxuI)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0034756 regulation of iron ion transport
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: UniProtKB:P23484
 ECO:0000250
sequence similarity evidence used in manual assertion		 18086184 Reviewed by curator
Cellular Component GO:0005829 cytosol
NAS
Non-traceable Author Statement 		ECO:0000303
non-traceable author statement used in manual assertion		 18086184 Reviewed by curator
Molecular Function GO:0016987 sigma factor activity
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: UniProtKB:P23484
 ECO:0000250
sequence similarity evidence used in manual assertion		 18086184 Reviewed by curator
Molecular Function GO:0016987 sigma factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02937
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02937
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006352 DNA-templated transcription, initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02937
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF04542 Sigma-70 region 2 IPR007627 RNA polymerase sigma-70 region 2 13 78 7.5E-15
SUPERFAMILY SSF88946 Sigma2 domain of RNA polymerase sigma factors IPR013325 RNA polymerase sigma factor, region 2 10 88 3.61E-15
CDD cd06171 Sigma70_r4 - - 114 166 1.1388E-9
MobiDBLite mobidb-lite consensus disorder prediction - - 77 106 -
Gene3D G3DSA:1.10.1740.10 - - - 3 96 9.1E-16
Pfam PF08281 Sigma-70, region 4 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 115 165 5.6E-16
MobiDBLite mobidb-lite consensus disorder prediction - - 77 91 -
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 108 171 4.8E-18
PANTHER PTHR43133 RNA POLYMERASE ECF-TYPE SIGMA FACTO IPR039425 RNA polymerase sigma-70 like 10 171 1.4E-35
SUPERFAMILY SSF88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors IPR013324 RNA polymerase sigma factor, region 3/4-like 96 170 7.63E-16
NCBIfam TIGR02937 JCVI: sigma-70 family RNA polymerase sigma factor IPR014284 RNA polymerase sigma-70 like domain 11 169 3.9E-27

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.