Pseudomonas aeruginosa PAO1, PA1330

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA1330
Name
Replicon chromosome
Genomic location 1442069 - 1442848 (+ strand)
Transposon Mutants 1 transposon mutants in PAO1
Transposon Mutants in orthologs 2 transposon mutants in orthologs

Cross-References

RefSeq NP_250021.1
GI 15596527
Affymetrix PA1330_at
DNASU PaCD00006614
Entrez 879433
GenBank AAG04719.1
INSDC AAG04719.1
NCBI Locus Tag PA1330
protein_id(GenBank) gb|AAG04719.1|AE004562_6|gnl|PseudoCAP|PA1330
TIGR NTL03PA01331
UniParc UPI00000C5319
UniProtKB Acc Q9I414
UniProtKB ID Q9I414_PSEAE
UniRef100 UniRef100_Q9I414
UniRef50 UniRef50_Q397A0
UniRef90 UniRef90_Q9I414

Product

Feature Type CDS
Coding Frame 1
Product Name
probable short-chain dehydrogenase
Product Name Confidence: Class 3
Synonyms
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) -1.82
Kyte-Doolittle Hydrophobicity Value -0.305
Molecular Weight (kDa) 28.9
Isoelectric Point (pI) 6.38

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 647 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001266 (313 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA1330

Human Homologs

Ensembl 110, assembly GRCh38.p14
short chain dehydrogenase/reductase family 16C member 5 [Source:HGNC Symbol;Acc:HGNC:30311]
E-value: 3.5e-09
Percent Identity: 30.0
Ensembl 110, assembly GRCh38.p14
short chain dehydrogenase/reductase family 16C member 5 [Source:HGNC Symbol;Acc:HGNC:30311]
E-value: 3.5e-09
Percent Identity: 30.0

References

No references are associated with this feature.