Pseudomonas aeruginosa PAO1, PA1340 (aatM)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0051938	L-glutamate import	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	18833300	Reviewed by curator
Biological Process	GO:0006868	glutamine transport	IMP Inferred from Mutant Phenotype	ECO:0000016 loss-of-function mutant phenotype evidence	18310026	Reviewed by curator
Biological Process	GO:0042940	D-amino acid transport	IMP Inferred from Mutant Phenotype	ECO:0000016 loss-of-function mutant phenotype evidence	25082951	Reviewed by curator
Cellular Component	GO:0043190	ATP-binding cassette (ABC) transporter complex	ISS Inferred from Sequence or Structural Similarity	ECO:0000250 sequence similarity evidence used in manual assertion	25082951	Reviewed by curator
Biological Process	GO:1903803	L-glutamine import across plasma membrane	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	18833300	Reviewed by curator
Cellular Component	GO:0016020	membrane	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00528	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Cellular Component	GO:0016021	integral component of membrane	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR01726	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0022857	transmembrane transporter activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR01726	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0055085	transmembrane transport	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00528	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0071705	nitrogen compound transport	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR01726	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Cellular Component	GO:0043190	ATP-binding cassette (ABC) transporter complex	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR01726	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Amino acid biosynthesis and metabolism Other PAO1 genes in this class Transport of small molecules Other PAO1 genes in this class

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pae02010	ABC transporters	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pae02020	Two-component system	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
ProSiteProfiles	PS50928	ABC transporter integral membrane type-1 domain profile.	IPR000515	ABC transporter type 1, transmembrane domain MetI-like	18	213	17.682
TIGRFAM	TIGR01726	HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family	IPR010065	Amino acid ABC transporter, permease protein, 3-TM domain	11	115	4.0E-25
Pfam	PF00528	Binding-protein-dependent transport system inner membrane component	IPR000515	ABC transporter type 1, transmembrane domain MetI-like	32	221	2.0E-20
Gene3D	G3DSA:1.10.3720.10		IPR035906	MetI-like superfamily	1	221	1.9E-49
CDD	cd06261	TM_PBP2	IPR000515	ABC transporter type 1, transmembrane domain MetI-like	18	211	1.81799E-15
SUPERFAMILY	SSF161098		IPR035906	MetI-like superfamily	12	206	2.09E-40

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.