Pseudomonas aeruginosa PAO1, PA1365

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0015891 siderophore transport
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: UniProtKB:D8MZE3
ECO:0000250
sequence similarity evidence used in manual assertion
18086184 Reviewed by curator
Cellular Component GO:0019867 outer membrane
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: UniProtKB:D8MZE3
ECO:0000250
sequence similarity evidence used in manual assertion
18086184 Reviewed by curator
Biological Process GO:0007166 cell surface receptor signaling pathway
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: UniProtKB:D8MZE3
ECO:0000250
sequence similarity evidence used in manual assertion
18086184 Reviewed by curator
Molecular Function GO:0038023 signaling receptor activity
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: UniProtKB:D8MZE3
ECO:0000250
sequence similarity evidence used in manual assertion
18086184 Reviewed by curator
Molecular Function GO:0015344 siderophore uptake transmembrane transporter activity
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: UniProtKB:D8MZE3
ECO:0000250
sequence similarity evidence used in manual assertion
18086184 Reviewed by curator
Cellular Component GO:0009279 cell outer membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0038023 signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015891 siderophore transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0019867 outer membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00965
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015343 siderophore transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transport of small molecules Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00965 STN_2 IPR011662 Secretin/TonB, short N-terminal domain 53 104 4.9E-14
CDD cd01347 ligand_gated_channel - - 143 813 6.87489E-80
Gene3D G3DSA:2.40.170.20 - IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily 274 812 2.3E-62
PANTHER PTHR30069 TONB-DEPENDENT OUTER MEMBRANE RECEPTOR IPR039426 TonB-dependent receptor-like 98 809 4.4E-109
Gene3D G3DSA:2.170.130.10 - IPR037066 TonB-dependent receptor, plug domain superfamily 130 245 7.4E-20
SUPERFAMILY SSF56935 Porins - - 122 813 2.35E-95
Pfam PF07715 TonB-dependent Receptor Plug Domain IPR012910 TonB-dependent receptor, plug domain 138 238 4.3E-18
NCBIfam TIGR01783 JCVI: TonB-dependent siderophore receptor IPR010105 TonB-dependent siderophore receptor 139 794 1.7E-102
Pfam PF00593 TonB dependent receptor IPR000531 TonB-dependent receptor-like, beta-barrel 344 809 7.1E-43
Gene3D G3DSA:3.55.50.30 - - - 23 129 7.1E-26

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.