Pseudomonas aeruginosa PAO1, PA1423 (bdlA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009405 pathogenesis
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 24901523 Reviewed by curator
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004888 transmembrane signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Cell wall / LPS / capsule Other PAO1 genes in this class
Chemotaxis Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Chemotactic transducer (MCP) ECO:0000037
not_recorded
KEGG pae02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae02030 Bacterial chemotaxis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP nutrient-induced dispersion ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00130 PAS IPR000014 PAS domain 14 109 4.97193E-13
CDD cd00130 PAS IPR000014 PAS domain 129 231 5.32018E-12
SMART SM00091 pas_2 IPR000014 PAS domain 117 186 9.5
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 225 412 9.29E-57
FunFam G3DSA:3.30.450.20:FF:000103 Methyl-accepting chemotaxis protein - - 119 233 5.8E-60
SMART SM00086 pac_2 IPR001610 PAC motif 70 112 0.049
SMART SM00091 pas_2 IPR000014 PAS domain 3 65 2.3
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 129 231 3.49E-25
Gene3D G3DSA:1.10.287.950 - - - 227 415 1.8E-52
PANTHER PTHR24422 CHEMOTAXIS PROTEIN METHYLTRANSFERASE - - 3 408 2.9E-58
CDD cd11386 MCP_signal - - 242 414 5.76349E-54
Gene3D G3DSA:3.30.450.20 PAS domain - - 1 104 7.6E-23
SMART SM00086 pac_2 IPR001610 PAC motif 192 234 1.4E-7
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 8 118 2.8E-15
Gene3D G3DSA:3.30.450.20 PAS domain - - 105 226 1.8E-21
FunFam G3DSA:3.30.450.20:FF:000103 Methyl-accepting chemotaxis protein - - 1 111 2.7E-52
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 332 361 6.0E-19
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 129 237 7.5E-15
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 7 109 3.4E-26
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 252 413 4.6E-41
Pfam PF13426 PAS domain IPR000014 PAS domain 14 109 2.2E-15
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 303 330 6.0E-19
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 223 417 3.0E-24
Pfam PF08447 PAS fold IPR013655 PAS fold-3 142 227 1.7E-15

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.