Pseudomonas aeruginosa PAO1, PA1430 (lasR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Upstream Motifs

*Up to 500bp upstream
Name Start Stop Strand Evidence PMID
Vfr binding site 1557882 1557903 +
9190808 Details
-35 region 1557901 1557906 +
9190808 Details
lux box 1557923 1557943 +
9190808 Details
-10 region 1557931 1557936 +
9190808 Details
transcriptional initiation site (+1) 1557940 1557940 +
9190808 Details
transcriptional initiation site (+1) 1557970 1557970 +
9190808 Details
potential lux box upstream of lasR gene 1557922 1557971 +
9190808 Details
Vfr box upstream of lasR gene (CCS) 1557882 1557921 +
9190808 Details
lasR promoter P2 1557896 1557945 +
9190808 Details
lasR promoter P1 1557926 1557975 +
9190808 Details
Vfr protected region upstream of lasR gene 1557882 1558131 +
17159200 Details
Vfr binding site 1557882 1557903 + ECO:0000314
direct assay evidence used in manual assertion
17159200 Details
AmpR binding site 1558140 1558153 + ECO:0000314
direct assay evidence used in manual assertion
22275523 Details
AmpR binding site 1558120 1558133 + ECO:0000314
direct assay evidence used in manual assertion
24157832 Details
Palindrome 1557882 1557903 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details

Downstream motifs

*Up to 500bp downstream
Name Start Stop Strand Evidence PMID
lux-box-like sequence (lasR binding site) 1559179 1559198 -
10094696 Details
LasR binding site (lux-box-like sequence) 1559188 1559206 -
10094696 Details
transcriptional initiation site (+1) 1559229 1559229 +
11544214 Details
lasI (constitutive promoter) 1559197 1559246 +
7836299 Details
lasI (induced promoter) 1559185 1559234 +
7836299 Details
LasR binding site 1559181 1559196 - ECO:0000314
direct assay evidence used in manual assertion
15505212 Details
RsaL binding site 1559206 1559220 + ECO:0000314
direct assay evidence used in manual assertion
17172347 Details
VqsM binding site 1559128 1559142 + ECO:0000314
direct assay evidence used in manual assertion
12207696 Details
Shine-Dalgarno sequence 1559241 1559245 + ECO:0000256
match to sequence model evidence used in automatic assertion
Details