Pseudomonas aeruginosa PAO1, PA4459 (lptC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0001530 lipopolysaccharide binding
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: UniProtKB:P0ADV9
 ECO:0000250
sequence similarity evidence used in manual assertion		 23138981 Reviewed by curator
Molecular Function GO:0042626 ATPase-coupled transmembrane transporter activity
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: UniProtKB:P0ADV9
 ECO:0000250
sequence similarity evidence used in manual assertion		 23138981 Reviewed by curator
Biological Process GO:0015921 lipopolysaccharide export
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: UniProtKB:P0ADV9
 ECO:0000250
sequence similarity evidence used in manual assertion		 23138981 Reviewed by curator
Molecular Function GO:0015221 lipopolysaccharide transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR04409
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015920 lipopolysaccharide transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR04409
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005886 plasma membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR04409
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Hypothetical, unclassified, unknown Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR04409 JCVI: LPS export ABC transporter periplasmic protein LptC IPR026265 Lipopolysaccharide export system protein LptC 10 186 7.5E-52
PANTHER PTHR37481 LIPOPOLYSACCHARIDE EXPORT SYSTEM PROTEIN LPTC - - 1 189 6.7E-45
Hamap MF_01915 Lipopolysaccharide export system protein LptC [lptC]. IPR026265 Lipopolysaccharide export system protein LptC 6 190 26.536064
Gene3D G3DSA:2.60.450.10 Lipopolysaccharide (LPS) transport protein A like domain - - 64 190 1.5E-34
Pfam PF06835 Lipopolysaccharide-assembly, LptC-related IPR010664 Lipopolysaccharide assembly, LptC-related 14 188 7.3E-52

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.