Pseudomonas aeruginosa PAO1, PA4462 (rpoN)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:1900191 negative regulation of single-species biofilm formation
IMP
Inferred from Mutant Phenotype 		ECO:0000015
mutant phenotype evidence		 15231779 Reviewed by curator
Biological Process GO:0006355 regulation of transcription, DNA-templated
IDA
Inferred from Direct Assay 		ECO:0000002
direct assay evidence
Biological Process GO:0006352 DNA-templated transcription, initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04963
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04963
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016987 sigma factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR32248
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0001216 DNA-binding transcription activator activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR32248
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR02395 JCVI: RNA polymerase factor sigma-54 IPR000394 RNA polymerase sigma factor 54 10 494 0.0
PRINTS PR00045 Sigma-54 factor signature IPR000394 RNA polymerase sigma factor 54 396 408 1.4E-32
FunFam G3DSA:1.10.10.60:FF:000045 RNA polymerase sigma-54 factor - - 430 494 6.8E-38
PIRSF PIRSF000774 RpoN IPR000394 RNA polymerase sigma factor 54 1 497 0.0
Pfam PF04963 Sigma-54 factor, core binding domain IPR007046 RNA polymerase sigma factor 54, core-binding domain 129 323 5.2E-63
PRINTS PR00045 Sigma-54 factor signature IPR000394 RNA polymerase sigma factor 54 470 488 1.4E-32
Gene3D G3DSA:1.10.10.60 - - - 430 494 2.8E-25
FunFam G3DSA:1.10.10.1330:FF:000001 RNA polymerase sigma-54 factor - - 140 213 7.5E-36
PANTHER PTHR32248 RNA POLYMERASE SIGMA-54 FACTOR IPR000394 RNA polymerase sigma factor 54 1 496 0.0
MobiDBLite mobidb-lite consensus disorder prediction - - 42 100 -
Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) IPR000394 RNA polymerase sigma factor 54 5 48 9.1E-17
Gene3D G3DSA:1.10.10.1330 - IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily 140 213 2.6E-23
Coils Coil Coil - - 252 272 -
Pfam PF04552 Sigma-54, DNA binding domain IPR007634 RNA polymerase sigma factor 54, DNA-binding 337 495 3.0E-70
PRINTS PR00045 Sigma-54 factor signature IPR000394 RNA polymerase sigma factor 54 206 223 1.4E-32
PRINTS PR00045 Sigma-54 factor signature IPR000394 RNA polymerase sigma factor 54 412 423 1.4E-32
MobiDBLite mobidb-lite consensus disorder prediction - - 72 89 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.