Pseudomonas aeruginosa PAO1, PA5399 (dgcB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0047866 dimethylglycine oxidase activity
IDA
Inferred from Direct Assay
ECO:0000314
direct assay evidence used in manual assertion
17951379 Reviewed by curator
Biological Process GO:0031457 glycine betaine catabolic process
IMP
Inferred from Mutant Phenotype
ECO:0000015
mutant phenotype evidence
17951379 Reviewed by curator
Biological Process GO:0042426 choline catabolic process
IMP
Inferred from Mutant Phenotype
ECO:0000015
mutant phenotype evidence
17951379 Reviewed by curator
Molecular Function GO:0047865 dimethylglycine dehydrogenase activity
IDA
Inferred from Direct Assay
ECO:0000314
direct assay evidence used in manual assertion
17951379 Reviewed by curator
Molecular Function GO:0051536 iron-sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.1060.10
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Amino acid biosynthesis and metabolism Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP glycine betaine catabolism ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF02754 Cysteine-rich domain IPR004017 Cysteine-rich domain 402 481 0.0084
PANTHER PTHR43255 IRON-SULFUR-BINDING OXIDOREDUCTASE FADF-RELATED-RELATED - - 19 632 0.0
Pfam PF13183 4Fe-4S dicluster domain IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain 242 336 1.1E-11
Pfam PF11982 Domain of unknown function (DUF3483) IPR021872 Protein of unknown function DUF3483 4 220 1.1E-86
SUPERFAMILY SSF46548 alpha-helical ferredoxin - - 222 352 2.27E-19
Gene3D G3DSA:1.10.1060.10 - IPR009051 Alpha-helical ferredoxin 220 357 5.3E-28
Pfam PF02754 Cysteine-rich domain IPR004017 Cysteine-rich domain 525 611 1.1E-13
FunFam G3DSA:1.10.1060.10:FF:000014 DgcB, Dimethylglycine catabolism - - 218 357 5.5E-82

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.