Pseudomonas aeruginosa PAO1, PA5415 (glyA1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006520 cellular amino acid metabolic process
ISS
Inferred from Sequence or Structural Similarity
ECO:0000044
sequence similarity evidence
Biological Process GO:0035999 tetrahydrofolate interconversion
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00378
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0019264 glycine biosynthetic process from serine
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00378
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0030170 pyridoxal phosphate binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00378
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004372 glycine hydroxymethyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00378
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Amino acid biosynthesis and metabolism Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae00460 Cyanoamino acid metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc folate transformations I InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
PseudoCAP Glycine, serine and threonine metabolism ECO:0000037
not_recorded
MetaCyc glycine betaine degradation I InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pae00260 Glycine, serine and threonine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Methane metabolism ECO:0000037
not_recorded
MetaCyc purine nucleobases degradation II (anaerobic) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc formaldehyde assimilation I (serine pathway) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
PseudoCAP One carbon pool by folate ECO:0000037
not_recorded
KEGG pae01230 Biosynthesis of amino acids 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc folate transformations II InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Cyanoamino acid metabolism ECO:0000037
not_recorded
PseudoCyc 1CMET2-PWY N<sup>10</sup>-formyl-tetrahydrofolate biosynthesis 19.5 ECO:0000250
sequence similarity evidence used in manual assertion
12867747
KEGG pae00680 Methane metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCyc P106-PWY serine-isocitrate lyase pathway 19.5 ECO:0000250
sequence similarity evidence used in manual assertion
12867747
PseudoCAP Lysine biosynthesis ECO:0000037
not_recorded
KEGG pae01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc folate polyglutamylation InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pae00630 Glyoxylate and dicarboxylate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCyc GLYSYN-PWY glycine biosynthesis I 19.5 ECO:0000250
sequence similarity evidence used in manual assertion
12867747
MetaCyc photorespiration InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pae01200 Carbon metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc glycine betaine degradation II (mammalian) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pae00670 One carbon pool by folate 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCyc SER-GLYSYN-PWY superpathway of L-serine and glycine biosynthesis I 19.5 ECO:0000250
sequence similarity evidence used in manual assertion
12867747

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.90.1150.10 Aspartate Aminotransferase, domain 1 IPR015422 Pyridoxal phosphate-dependent transferase, small domain 11 416 0.0
Gene3D G3DSA:3.40.640.10 - IPR015421 Pyridoxal phosphate-dependent transferase, major domain 37 280 0.0
Pfam PF00464 Serine hydroxymethyltransferase IPR039429 Serine hydroxymethyltransferase-like domain 11 386 0.0
PANTHER PTHR11680 SERINE HYDROXYMETHYLTRANSFERASE IPR001085 Serine hydroxymethyltransferase 7 388 0.0
FunFam G3DSA:3.40.640.10:FF:000001 Serine hydroxymethyltransferase - - 37 280 0.0
FunFam G3DSA:3.90.1150.10:FF:000003 Serine hydroxymethyltransferase - - 276 416 1.8E-59
CDD cd00378 SHMT IPR001085 Serine hydroxymethyltransferase 11 409 0.0
PIRSF PIRSF000412 SHMT IPR001085 Serine hydroxymethyltransferase 1 415 0.0
SUPERFAMILY SSF53383 PLP-dependent transferases IPR015424 Pyridoxal phosphate-dependent transferase 7 416 0.0
Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. IPR001085 Serine hydroxymethyltransferase 7 417 53.037418

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.