Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Biological Process | GO:0006520 | cellular amino acid metabolic process | Inferred from Sequence or Structural Similarity | ECO:0000044 sequence similarity evidence |
||
Biological Process | GO:0035999 | tetrahydrofolate interconversion |
Inferred from Sequence Model
Term mapped from: InterPro:cd00378
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0019264 | glycine biosynthetic process from serine |
Inferred from Sequence Model
Term mapped from: InterPro:cd00378
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0030170 | pyridoxal phosphate binding |
Inferred from Sequence Model
Term mapped from: InterPro:cd00378
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0004372 | glycine hydroxymethyltransferase activity |
Inferred from Sequence Model
Term mapped from: InterPro:cd00378
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
|
Database | Xref | Pathway | Version | Evidence | PMID |
---|---|---|---|---|---|
KEGG | pae00460 | Cyanoamino acid metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
MetaCyc | folate transformations I | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
PseudoCAP | Glycine, serine and threonine metabolism |
ECO:0000037
not_recorded |
|||
MetaCyc | glycine betaine degradation I | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
KEGG | pae00260 | Glycine, serine and threonine metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
PseudoCAP | Methane metabolism |
ECO:0000037
not_recorded |
|||
MetaCyc | purine nucleobases degradation II (anaerobic) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
MetaCyc | formaldehyde assimilation I (serine pathway) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
PseudoCAP | One carbon pool by folate |
ECO:0000037
not_recorded |
|||
KEGG | pae01230 | Biosynthesis of amino acids | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
MetaCyc | folate transformations II | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
KEGG | pae01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
PseudoCAP | Cyanoamino acid metabolism |
ECO:0000037
not_recorded |
|||
PseudoCyc | 1CMET2-PWY | N<sup>10</sup>-formyl-tetrahydrofolate biosynthesis | 19.5 |
ECO:0000250
sequence similarity evidence used in manual assertion |
12867747 |
KEGG | pae00680 | Methane metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
KEGG | pae01120 | Microbial metabolism in diverse environments | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
PseudoCyc | P106-PWY | serine-isocitrate lyase pathway | 19.5 |
ECO:0000250
sequence similarity evidence used in manual assertion |
12867747 |
PseudoCAP | Lysine biosynthesis |
ECO:0000037
not_recorded |
|||
KEGG | pae01130 | Biosynthesis of antibiotics | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
MetaCyc | folate polyglutamylation | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
KEGG | pae00630 | Glyoxylate and dicarboxylate metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
KEGG | pae01110 | Biosynthesis of secondary metabolites | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
PseudoCyc | GLYSYN-PWY | glycine biosynthesis I | 19.5 |
ECO:0000250
sequence similarity evidence used in manual assertion |
12867747 |
MetaCyc | photorespiration | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
KEGG | pae01200 | Carbon metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
MetaCyc | glycine betaine degradation II (mammalian) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
KEGG | pae00670 | One carbon pool by folate | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
PseudoCyc | SER-GLYSYN-PWY | superpathway of L-serine and glycine biosynthesis I | 19.5 |
ECO:0000250
sequence similarity evidence used in manual assertion |
12867747 |
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase, domain 1 | IPR015422 | Pyridoxal phosphate-dependent transferase, small domain | 11 | 416 | 0.0 |
Gene3D | G3DSA:3.40.640.10 | - | IPR015421 | Pyridoxal phosphate-dependent transferase, major domain | 37 | 280 | 0.0 |
Pfam | PF00464 | Serine hydroxymethyltransferase | IPR039429 | Serine hydroxymethyltransferase-like domain | 11 | 386 | 0.0 |
PANTHER | PTHR11680 | SERINE HYDROXYMETHYLTRANSFERASE | IPR001085 | Serine hydroxymethyltransferase | 7 | 388 | 0.0 |
FunFam | G3DSA:3.40.640.10:FF:000001 | Serine hydroxymethyltransferase | - | - | 37 | 280 | 0.0 |
FunFam | G3DSA:3.90.1150.10:FF:000003 | Serine hydroxymethyltransferase | - | - | 276 | 416 | 1.8E-59 |
CDD | cd00378 | SHMT | IPR001085 | Serine hydroxymethyltransferase | 11 | 409 | 0.0 |
PIRSF | PIRSF000412 | SHMT | IPR001085 | Serine hydroxymethyltransferase | 1 | 415 | 0.0 |
SUPERFAMILY | SSF53383 | PLP-dependent transferases | IPR015424 | Pyridoxal phosphate-dependent transferase | 7 | 416 | 0.0 |
Hamap | MF_00051 | Serine hydroxymethyltransferase [glyA]. | IPR001085 | Serine hydroxymethyltransferase | 7 | 417 | 53.037418 |