Pseudomonas aeruginosa PAO1, PA5417 (soxD)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:1901053	sarcosine catabolic process	IMP Inferred from Mutant Phenotype	ECO:0000015 mutant phenotype evidence	17951379	Reviewed by curator
Molecular Function	GO:0008115	sarcosine oxidase activity	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	17951382	Reviewed by curator
Biological Process	GO:1901053	sarcosine catabolic process	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	17951381	Reviewed by curator
Molecular Function	GO:0008115	sarcosine oxidase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04267	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0046653	tetrahydrofolate metabolic process	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04267	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Amino acid biosynthesis and metabolism Other PAO1 genes in this class

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pae01100	Metabolic pathways	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
PseudoCAP		glycine betaine catabolism		ECO:0000037 not_recorded
PseudoCyc	CRNFORCAT-PWY	creatinine degradation I	19.5	ECO:0000250 sequence similarity evidence used in manual assertion	12867747
KEGG	pae00260	Glycine, serine and threonine metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Gene3D	G3DSA:3.30.2270.10	-	IPR038561	Sarcosine oxidase subunit delta superfamily	1	98	2.5E-38
Pfam	PF04267	Sarcosine oxidase, delta subunit family	IPR006279	Sarcosine oxidase, delta subunit, heterotetrameric	4	84	3.0E-37
NCBIfam	TIGR01374	JCVI: sarcosine oxidase subunit delta family protein	IPR006279	Sarcosine oxidase, delta subunit, heterotetrameric	3	87	7.2E-40
FunFam	G3DSA:3.30.2270.10:FF:000002	Sarcosine oxidase subunit delta	-	-	1	98	1.7E-70

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.