Pseudomonas aeruginosa PAO1, PA5511 (mifR)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:1900233	positive regulation of single-species biofilm formation on inanimate substrate	IMP Inferred from Mutant Phenotype	ECO:0000015 mutant phenotype evidence	19936057	Reviewed by curator
Molecular Function	GO:0000156	phosphorelay response regulator activity	ISS Inferred from Sequence or Structural Similarity	ECO:0000250 sequence similarity evidence used in manual assertion	19936057	Reviewed by curator
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00158	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0008134	transcription factor binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00158	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0000160	phosphorelay signal transduction system	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00448	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016887	ATPase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00382	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0043565	sequence-specific DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF02954	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00158	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Cell wall / LPS / capsule Other PAO1 genes in this class Transcriptional regulators Other PAO1 genes in this class Two-component regulatory systems Other PAO1 genes in this class

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pae02020	Two-component system	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
PseudoCAP		Two-component System		ECO:0000037 not_recorded

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
CDD	cd17549	REC_DctD-like	-	-	5	134	3.4728E-79
Pfam	PF02954	Bacterial regulatory protein, Fis family	IPR002197	DNA binding HTH domain, Fis-type	394	433	1.1E-6
FunFam	G3DSA:3.40.50.2300:FF:000018	DNA-binding transcriptional regulator NtrC	-	-	1	132	3.7E-48
Gene3D	G3DSA:1.10.10.60	-	-	-	387	438	7.4E-7
SMART	SM00448	REC_2	IPR001789	Signal transduction response regulator, receiver domain	3	114	1.0E-31
Pfam	PF00158	Sigma-54 interaction domain	IPR002078	RNA polymerase sigma factor 54 interaction domain	145	310	8.2E-67
SMART	SM00382	AAA_5	IPR003593	AAA+ ATPase domain	164	307	4.2E-11
SUPERFAMILY	SSF52172	CheY-like	IPR011006	CheY-like superfamily	5	187	1.85E-43
CDD	cd00009	AAA	-	-	151	314	8.18655E-22
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	IPR027417	P-loop containing nucleoside triphosphate hydrolase	144	373	4.49E-68
PANTHER	PTHR32071	TRANSCRIPTIONAL REGULATORY PROTEIN	-	-	3	439	0.0
SUPERFAMILY	SSF46689	Homeodomain-like	IPR009057	Homeobox-like domain superfamily	355	436	3.76E-8
Pfam	PF00072	Response regulator receiver domain	IPR001789	Signal transduction response regulator, receiver domain	5	113	7.5E-29
Gene3D	G3DSA:1.10.8.60	-	-	-	315	384	3.0E-20
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	144	314	2.9E-62
FunFam	G3DSA:3.40.50.300:FF:000006	DNA-binding transcriptional regulator NtrC	-	-	137	314	6.4E-73
Gene3D	G3DSA:3.40.50.2300	-	-	-	2	143	1.3E-37

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.