Pseudomonas aeruginosa PAO1, PA5525

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd07377
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd07377
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 23 91 1.24E-15
SMART SM00345 IPR000524 Transcription regulator HTH, GntR 29 87 7.0E-12
SUPERFAMILY SSF48008 IPR008920 Transcription regulator FadR/GntR, C-terminal 94 230 2.41E-28
CDD cd07377 WHTH_GntR IPR000524 Transcription regulator HTH, GntR 25 87 8.85341E-13
SMART SM00895 IPR011711 GntR, C-terminal 97 221 1.1E-22
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 22 88 4.1E-18
Gene3D G3DSA:1.20.120.530 IPR008920 Transcription regulator FadR/GntR, C-terminal 91 222 1.3E-31
Pfam PF07729 FCD domain IPR011711 GntR, C-terminal 97 218 2.2E-26
ProSiteProfiles PS50949 GntR-type HTH domain profile. IPR000524 Transcription regulator HTH, GntR 23 90 15.631
Pfam PF00392 Bacterial regulatory proteins, gntR family IPR000524 Transcription regulator HTH, GntR 25 87 6.2E-17

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.