Pseudomonas aeruginosa PAO1, PA5550 (glmR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0045892 negative regulation of transcription, DNA-templated
IMP
Inferred from Mutant Phenotype 		ECO:0000015
mutant phenotype evidence		 14982774 Reviewed by curator
Biological Process GO:0045724 positive regulation of cilium assembly
IMP
Inferred from Mutant Phenotype 		ECO:0000015
mutant phenotype evidence		 14982774 Reviewed by curator
Biological Process GO:0006355 regulation of transcription, DNA-templated
IDA
Inferred from Direct Assay 		ECO:0000002
direct assay evidence
Biological Process GO:0032885 regulation of polysaccharide biosynthetic process
IMP
Inferred from Mutant Phenotype 		ECO:0000015
mutant phenotype evidence		 14982774 Reviewed by curator
Biological Process GO:2000147 positive regulation of cell motility
IMP
Inferred from Mutant Phenotype 		ECO:0000015
mutant phenotype evidence		 14982774 Reviewed by curator
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00037
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00037
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF100950 NagB/RpiA/CoA transferase-like IPR037171 NagB/RpiA transferase-like 77 234 2.51E-31
Pfam PF00455 DeoR C terminal sensor domain IPR014036 DeoR C-terminal sensor domain 79 233 2.7E-44
SMART SM01134 DeoRC_2 - - 73 234 7.0E-60
FunFam G3DSA:3.40.50.1360:FF:000006 Glucitol operon repressor - - 75 232 3.9E-78
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 8 65 2.02E-12
PANTHER PTHR30363 HTH-TYPE TRANSCRIPTIONAL REGULATOR SRLR-RELATED - - 8 250 9.4E-51
Gene3D G3DSA:3.40.50.1360 - - - 76 221 1.4E-10
PRINTS PR00037 LacR bacterial regulatory protein HTH signature IPR001034 DeoR-type HTH domain 42 60 2.7E-5
Pfam PF08220 DeoR-like helix-turn-helix domain IPR001034 DeoR-type HTH domain 10 61 1.0E-14
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 2 56 9.2E-7
PRINTS PR00037 LacR bacterial regulatory protein HTH signature IPR001034 DeoR-type HTH domain 28 42 2.7E-5
SMART SM00420 deor2 IPR001034 DeoR-type HTH domain 10 62 9.0E-14

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.