Pseudomonas aeruginosa PAO1, PA5567

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006400 tRNA modification
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00450
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.1360.120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003924 GTPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00450
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005525 GTP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00450
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Putative enzymes Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00326 GTP1/OBG GTP-binding protein family signature IPR006073 GTP binding domain 219 239 5.2E-5
Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. IPR004520 tRNA modification GTPase MnmE 6 455 32.781078
CDD cd04164 trmE IPR031168 TrmE-type guanine nucleotide-binding domain 214 378 1.47239E-78
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 217 383 1.6E-104
Pfam PF12631 MnmE helical domain IPR025867 MnmE, helical domain 123 452 3.5E-58
CDD cd14858 TrmE_N IPR018948 GTP-binding protein TrmE, N-terminal 6 118 2.17672E-57
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 73 373 8.76E-44
Pfam PF01926 50S ribosome-binding GTPase IPR006073 GTP binding domain 219 306 5.6E-24
PANTHER PTHR42714 TRNA MODIFICATION GTPASE GTPBP3 - - 7 455 3.3E-119
PRINTS PR00326 GTP1/OBG GTP-binding protein family signature IPR006073 GTP binding domain 286 304 5.2E-5
Pfam PF10396 GTP-binding protein TrmE N-terminus IPR018948 GTP-binding protein TrmE, N-terminal 7 120 1.9E-37
NCBIfam TIGR00450 JCVI: tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE IPR004520 tRNA modification GTPase MnmE 12 455 1.9E-102
NCBIfam TIGR00231 JCVI: small GTP-binding protein domain IPR005225 Small GTP-binding protein domain 217 367 1.7E-19
FunFam G3DSA:3.40.50.300:FF:000249 tRNA modification GTPase MnmE - - 217 383 8.6E-84
FunFam G3DSA:3.30.1360.120:FF:000001 tRNA modification GTPase MnmE - - 2 121 9.9E-56
Gene3D G3DSA:3.30.1360.120 Probable tRNA modification gtpase trme; domain 1 IPR027266 GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1 1 121 6.1E-41
SUPERFAMILY SSF116878 TrmE connector domain - - 121 455 8.63E-50
Gene3D G3DSA:1.20.120.430 tRNA modification GTPase MnmE domain 2 IPR027368 tRNA modification GTPase MnmE domain 2 122 455 1.6E-104

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.