Pseudomonas aeruginosa PAO1, PA0021

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Upstream Motifs

*Up to 500bp upstream
Name Start Stop Strand Evidence PMID
Inverted repeat: CGGCCTGCTG-N50-CAGCAGGCCG 22635 22704 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details
Inverted repeat: CGAAACCCCCGCC-N2-GGCGGGGGTTTCG 22740 22767 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details
Rho-independent transcription terminator TERM 14 22738 22769 + ECO:0000246
computational combinatorial evidence used in automatic assertion
17313685 Details

Motifs annotated in this feature

Name Start Stop Strand Evidence PMID
Inverted repeat: CCAGCCAGCGC-N81-GCGCTGGCTGG 22998 23100 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details

Downstream motifs

*Up to 500bp downstream
Name Start Stop Strand Evidence PMID
VqsM binding site 24389 24403 + ECO:0000314
direct assay evidence used in manual assertion
11222621 Details
Shine-Dalgarno sequence 23990 23993 + ECO:0000256
match to sequence model evidence used in automatic assertion
Details