Pseudomonas aeruginosa UCBPP-PA14, PA14_00020 (dnaN)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003887 DNA-directed DNA polymerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02767
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008408 3'-5' exonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02767
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30478
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0009360 DNA polymerase III complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30478
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30478
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau00230 Purine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau03030 DNA replication 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau00240 Pyrimidine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00663 JCVI: DNA polymerase III subunit beta IPR001001 DNA polymerase III, beta sliding clamp 1 367 2.5E-110
Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain IPR022635 DNA polymerase III, beta sliding clamp, C-terminal 247 366 2.4E-40
SMART SM00480 pol35 IPR001001 DNA polymerase III, beta sliding clamp 17 363 0.0
Gene3D G3DSA:3.10.150.10 DNA Polymerase III, subunit A, domain 2 - - 1 123 6.2E-50
Gene3D G3DSA:3.10.150.10 DNA Polymerase III, subunit A, domain 2 - - 125 248 2.9E-41
FunFam G3DSA:3.10.150.10:FF:000003 Beta sliding clamp - - 249 367 2.7E-59
SUPERFAMILY SSF55979 DNA clamp IPR046938 DNA clamp superfamily 126 245 3.14E-31
Pfam PF02767 DNA polymerase III beta subunit, central domain IPR022637 DNA polymerase III, beta sliding clamp, central 130 244 1.8E-39
FunFam G3DSA:3.10.150.10:FF:000002 Beta sliding clamp - - 124 248 2.0E-61
FunFam G3DSA:3.10.150.10:FF:000001 Beta sliding clamp - - 1 123 5.2E-55
Gene3D G3DSA:3.10.150.10 DNA Polymerase III, subunit A, domain 2 - - 249 367 1.4E-34
SUPERFAMILY SSF55979 DNA clamp IPR046938 DNA clamp superfamily 246 367 7.25E-38
SUPERFAMILY SSF55979 DNA clamp IPR046938 DNA clamp superfamily 1 120 3.14E-29
Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain IPR022634 DNA polymerase III, beta sliding clamp, N-terminal 1 119 8.9E-42
PANTHER PTHR30478 DNA POLYMERASE III SUBUNIT BETA IPR001001 DNA polymerase III, beta sliding clamp 1 367 0.0
PIRSF PIRSF000804 DNA_pol_III_b IPR001001 DNA polymerase III, beta sliding clamp 1 367 2.9E-125
CDD cd00140 beta_clamp IPR001001 DNA polymerase III, beta sliding clamp 1 366 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.