Pseudomonas aeruginosa UCBPP-PA14, PA14_01960

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transport of small molecules Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF111369 HlyD-like secretion proteins - - 47 274 8.63E-24
PANTHER PTHR30469 MULTIDRUG RESISTANCE PROTEIN MDTA - - 20 355 2.5E-75
Gene3D G3DSA:1.10.287.470 Helix hairpin bin - - 90 163 2.8E-35
Coils Coil Coil - - 96 123 -
Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain 56 265 1.1E-16
Gene3D G3DSA:2.40.420.20 - - - 262 351 3.1E-15
NCBIfam TIGR01730 JCVI: efflux RND transporter periplasmic adaptor subunit IPR006143 RND efflux pump, membrane fusion protein 32 351 1.7E-73
Gene3D G3DSA:2.40.50.100 - - - 55 197 2.8E-35
Gene3D G3DSA:2.40.30.170 - - - 49 258 2.8E-35
Coils Coil Coil - - 141 161 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.