Pseudomonas aeruginosa UCBPP-PA14, PA14_03070

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 254 269 8.2E-7
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 208 286 9.6E-20
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 269 285 8.2E-7
Gene3D G3DSA:1.10.10.60 - - - 183 287 1.9E-23
Pfam PF02311 AraC-like ligand binding domain IPR003313 AraC-type arabinose-binding/dimerisation domain 32 160 2.5E-8
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 202 285 1.2E-24
SUPERFAMILY SSF51182 RmlC-like cupins IPR011051 RmlC-like cupin domain superfamily 40 138 1.33E-11
Gene3D G3DSA:2.60.120.10 Jelly Rolls IPR014710 RmlC-like jelly roll fold 27 105 1.4E-7
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 241 287 8.8E-12
CDD cd06999 cupin_HpaA-like_N IPR047264 HpaA-like, N-terminal cupin domain 8 105 3.33135E-51
PANTHER PTHR43280 ARAC-FAMILY TRANSCRIPTIONAL REGULATOR - - 40 286 4.3E-27

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.