Pseudomonas aeruginosa UCBPP-PA14, PA14_05040

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00539
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04055
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006779 porphyrin-containing compound biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00539
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004109 coproporphyrinogen oxidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00539
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051539 4 iron, 4 sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00539
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051536 iron-sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04055
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Putative enzymes Other UCBPP-PA14 genes in this class
Energy metabolism Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00729 MiaB IPR006638 Elp3/MiaA/NifB-like, radical SAM core domain 11 227 5.1E-57
Pfam PF04055 Radical SAM superfamily IPR007197 Radical SAM 16 183 6.8E-20
NCBIfam TIGR00539 JCVI: radical SAM family heme chaperone HemW IPR004559 Heme chaperone HemW-like 13 346 2.7E-117
CDD cd01335 Radical_SAM - - 20 222 1.01205E-13
SFLD SFLDF00288 HemN-like, clustered with nucleoside-triphosphate RdgB - - 7 383 0.0
SUPERFAMILY SSF102114 Radical SAM enzymes - - 10 383 8.89E-107
SFLD SFLDF00562 HemN-like, clustered with heat shock genes IPR004559 Heme chaperone HemW-like 11 383 0.0
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 14 223 8.8E-11
SFLD SFLDS00029 Radical SAM IPR007197 Radical SAM 7 383 0.0
Pfam PF06969 HemN C-terminal domain IPR010723 HemN, C-terminal 309 373 6.4E-14
SFLD SFLDG01082 B12-binding domain containing - - 21 251 3.6E-17
PANTHER PTHR13932 COPROPORPHYRINIGEN III OXIDASE IPR034505 Anaerobic coproporphyrinogen-III oxidase 10 383 1.9E-110

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.