Pseudomonas aeruginosa UCBPP-PA14, PA14_05560

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0042255 ribosome assembly
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00968
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003724 RNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00968
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau03018 RNA degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650 Helicase, C-terminal 238 383 22.977
MobiDBLite mobidb-lite consensus disorder prediction 521 542 -
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 80 365 3.4E-73
ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site 158 166 -
MobiDBLite mobidb-lite consensus disorder prediction 467 482 -
ProSiteProfiles PS51195 DEAD-box RNA helicase Q motif profile. IPR014014 RNA helicase, DEAD-box type, Q motif 1 29 12.152
MobiDBLite mobidb-lite consensus disorder prediction 605 639 -
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001 Helicase superfamily 1/2, ATP-binding domain 32 212 31.019
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 24 102 2.92E-5
MobiDBLite mobidb-lite consensus disorder prediction 397 420 -
SMART SM00487 IPR014001 Helicase superfamily 1/2, ATP-binding domain 20 227 8.3E-62
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 241 344 2.9E-26
CDD cd00268 DEADc 12 213 1.20483E-99
Gene3D G3DSA:3.40.50.300 219 437 1.5E-49
CDD cd18787 SF2_C_DEAD 224 353 4.45036E-60
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 25 199 3.8E-45
Gene3D G3DSA:3.40.50.300 1 215 1.7E-75
Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. IPR028622 ATP-dependent RNA helicase RhlE 1 566 50.609
SMART SM00490 IPR001650 Helicase, C-terminal 263 344 1.6E-32
MobiDBLite mobidb-lite consensus disorder prediction 386 639 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.