Pseudomonas aeruginosa UCBPP-PA14, PA14_05560

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003724 RNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00968
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0042255 ribosome assembly
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00968
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau03018 RNA degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
MobiDBLite mobidb-lite consensus disorder prediction - - 605 639 -
FunFam G3DSA:3.40.50.300:FF:000108 ATP-dependent RNA helicase RhlE - - 1 215 5.9E-91
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 241 344 3.2E-26
PANTHER PTHR47959 ATP-DEPENDENT RNA HELICASE RHLE-RELATED - - 2 572 0.0
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 263 344 1.6E-32
CDD cd00268 DEADc - - 12 213 1.45981E-99
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 24 102 2.92E-5
MobiDBLite mobidb-lite consensus disorder prediction - - 467 482 -
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 1 215 6.6E-76
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 80 365 3.4E-73
MobiDBLite mobidb-lite consensus disorder prediction - - 397 420 -
Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. IPR028622 ATP-dependent RNA helicase RhlE 1 566 50.609222
CDD cd18787 SF2_C_DEAD - - 224 353 5.39222E-60
MobiDBLite mobidb-lite consensus disorder prediction - - 521 542 -
FunFam G3DSA:3.40.50.300:FF:000468 ATP-dependent RNA helicase RhlE - - 218 401 6.2E-94
MobiDBLite mobidb-lite consensus disorder prediction - - 386 639 -
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 20 227 8.3E-62
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 25 199 4.1E-45
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 218 437 1.6E-50

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.