Pseudomonas aeruginosa UCBPP-PA14, PA14_05950 (dbpA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.30.70.330:FF:000254 ATP-dependent RNA helicase DbpA - - 386 458 2.0E-34
CDD cd18787 SF2_C_DEAD - - 217 346 1.00134E-48
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 211 367 1.9E-44
PANTHER PTHR47959 ATP-DEPENDENT RNA HELICASE RHLE-RELATED - - 4 364 8.6E-118
Gene3D G3DSA:3.30.70.330 - IPR012677 Nucleotide-binding alpha-beta plait domain superfamily 386 457 4.1E-21
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 230 337 1.4E-25
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 28 195 2.7E-47
CDD cd12501 RRM_EcDbpA_like - - 386 458 1.42486E-37
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 1 210 4.9E-75
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 72 357 2.79E-72
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 256 337 1.2E-27
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 23 220 5.5E-59
CDD cd00268 DEADc - - 15 207 1.16998E-96
Pfam PF03880 DbpA RNA binding domain IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain 386 456 9.5E-24

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.