Pseudomonas aeruginosa UCBPP-PA14, PA14_06670 (nirJ)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0051539 4 iron, 4 sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDF00393
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051536 iron-sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04055
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04055
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Energy metabolism Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SFLD SFLDF00393 heme D1 biosynthesis (NirJ-like) IPR023992 Pre-heme d1 synthase NirJ 1 383 0.0
SFLD SFLDG01072 dehydrogenase like - - 1 383 0.0
FunFam G3DSA:3.20.20.70:FF:000188 Mycofactocin radical SAM maturase MftC - - 22 331 2.0E-101
Pfam PF04055 Radical SAM superfamily IPR007197 Radical SAM 33 187 1.4E-25
NCBIfam TIGR04051 JCVI: heme d1 biosynthesis radical SAM protein NirJ IPR023992 Pre-heme d1 synthase NirJ 26 378 0.0
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 22 248 3.1E-47
Pfam PF13353 4Fe-4S single cluster domain - - 28 138 1.7E-8
CDD cd01335 Radical_SAM - - 31 214 3.30937E-25
SUPERFAMILY SSF102114 Radical SAM enzymes - - 23 351 2.09E-68
SMART SM00729 MiaB IPR006638 Elp3/MiaA/NifB-like, radical SAM core domain 27 230 5.8E-4
PANTHER PTHR11228 RADICAL SAM DOMAIN PROTEIN - - 26 370 5.9E-84
PIRSF PIRSF037420 PqqE IPR017200 Coenzyme PQQ synthesis protein E-like 13 386 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.