Pseudomonas aeruginosa UCBPP-PA14, PA14_06720 (nirF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas aeruginosa UCBPP-PA14 (Lee et al., 2006)
GCF_000014625.1|latest
Locus Tag
PA14_06720
Name
nirF
Replicon chromosome
Genomic location 586475 - 587653 (- strand)
Transposon Mutants 1 transposon mutants in UCBPP-PA14
Transposon Mutants in orthologs 4 transposon mutants in orthologs

Cross-References

RefSeq YP_788686.1
GI 116054242
Entrez 4383882
INSDC ABJ15478.1
NCBI Locus Tag PA14_06720
UniParc UPI0000241C8D
UniProtKB Acc Q02TQ0
UniProtKB ID Q02TQ0_PSEAB
UniRef100 UniRef100_W0YK21
UniRef50 UniRef50_Q51480
UniRef90 UniRef90_Q51480

Product

Feature Type CDS
Coding Frame 1
Product Name
heme d1 biosynthesis protein NirF
Synonyms
Evidence for Translation
Charge (pH 7) -2.62
Kyte-Doolittle Hydrophobicity Value -0.256
Molecular Weight (kDa) 43.3
Isoelectric Point (pI) 6.52

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
6TV2 UNKNOWN FUNCTION 01/08/20 Heme d1 biosynthesis associated Protein NirF Pseudomonas aeruginosa PAO1 1.561 X-RAY DIFFRACTION 100.0
6TV9 UNKNOWN FUNCTION 01/09/20 Heme d1 biosynthesis associated Protein NirF in complex with dihydro-heme d1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) 1.893 X-RAY DIFFRACTION 100.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 69 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000494 (709 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA14_06720
Search term: nirF

Human Homologs

References

No references are associated with this feature.