Pseudomonas aeruginosa UCBPP-PA14, PA14_06970

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.260.40
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF07883 Cupin domain IPR013096 Cupin 2, conserved barrel 115 183 6.0E-15
CDD cd00093 HTH_XRE IPR001387 Cro/C1-type helix-turn-helix domain 12 69 2.12235E-11
PANTHER PTHR46797 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 1 183 1.5E-23
Pfam PF01381 Helix-turn-helix IPR001387 Cro/C1-type helix-turn-helix domain 15 69 1.4E-10
CDD cd02209 cupin_XRE_C - - 95 182 2.41284E-18
SUPERFAMILY SSF47413 lambda repressor-like DNA-binding domains IPR010982 Lambda repressor-like, DNA-binding domain superfamily 8 74 5.07E-14
SUPERFAMILY SSF51182 RmlC-like cupins IPR011051 RmlC-like cupin domain superfamily 55 182 1.89E-25
SMART SM00530 mbf_short4 IPR001387 Cro/C1-type helix-turn-helix domain 14 69 4.4E-11
Gene3D G3DSA:2.60.120.10 Jelly Rolls IPR014710 RmlC-like jelly roll fold 96 184 5.1E-15
Gene3D G3DSA:1.10.260.40 - IPR010982 Lambda repressor-like, DNA-binding domain superfamily 6 78 1.5E-14

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.