Pseudomonas aeruginosa UCBPP-PA14, PA14_07500 (rmcA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Hypothetical, unclassified, unknown Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF08447 PAS fold IPR013655 PAS fold-3 336 408 3.2E-10
Gene3D G3DSA:3.40.190.10 - - - 28 254 2.1E-71
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 813 970 6.98E-54
Gene3D G3DSA:3.30.450.20 PAS domain - - 424 548 2.9E-21
SMART SM00091 pas_2 IPR000014 PAS domain 312 380 0.0026
Gene3D G3DSA:3.30.450.20 PAS domain - - 680 809 7.2E-37
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 547 673 2.97E-19
CDD cd00130 PAS IPR000014 PAS domain 692 794 9.65915E-13
SMART SM00052 duf2_2 IPR001633 EAL domain 979 1225 1.2E-122
SMART SM00091 pas_2 IPR000014 PAS domain 562 629 6.6E-6
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 979 1245 3.5E-104
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 666 1236 0.0
Gene3D G3DSA:3.40.190.10 - - - 123 217 2.1E-71
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 980 1235 2.2E-97
Pfam PF13426 PAS domain IPR000014 PAS domain 572 674 7.2E-8
SMART SM00062 AABind_6 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 38 258 1.5E-32
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 808 965 8.7E-54
Gene3D G3DSA:3.30.450.20 PAS domain - - 551 673 5.9E-20
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 436 556 2.0E-11
CDD cd00130 PAS IPR000014 PAS domain 448 547 2.01599E-6
SMART SM00091 pas_2 IPR000014 PAS domain 683 749 6.9E-8
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 297 424 1.82E-20
SMART SM00267 duf1_3 IPR000160 GGDEF domain 797 969 2.5E-71
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 39 256 2.99E-51
SMART SM00091 pas_2 IPR000014 PAS domain 438 505 1.8E-5
Pfam PF13426 PAS domain IPR000014 PAS domain 694 795 3.3E-15
Coils Coil Coil - - 286 320 -
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 688 795 5.24E-29
CDD cd01948 EAL IPR001633 EAL domain 985 1224 2.68543E-113
SMART SM00086 pac_2 IPR001610 PAC motif 510 550 3.5
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 804 968 3.5E-44
CDD cd00130 PAS IPR000014 PAS domain 331 423 1.88322E-6
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 810 978 1.3E-65
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 687 804 1.9E-19
SMART SM00086 pac_2 IPR001610 PAC motif 755 797 5.5E-5
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 423 548 2.09E-19
Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 39 256 1.1E-37
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 560 682 1.1E-15
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 803 970 4.5E-45
CDD cd01007 PBP2_BvgS_HisK_like - - 36 255 4.82492E-83
SMART SM00086 pac_2 IPR001610 PAC motif 386 426 2.5E-5
SMART SM00086 pac_2 IPR001610 PAC motif 635 675 83.0
CDD cd01949 GGDEF IPR000160 GGDEF domain 809 966 4.47087E-70
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 984 1231 6.93E-89
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 308 432 1.7E-13
CDD cd00130 PAS IPR000014 PAS domain 573 672 2.32317E-7
Pfam PF00563 EAL domain IPR001633 EAL domain 986 1220 3.6E-76
Pfam PF13426 PAS domain IPR000014 PAS domain 448 548 4.2E-5
Gene3D G3DSA:3.30.450.20 PAS domain - - 303 423 5.2E-23

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.